GgaINT0050354 @ galGal4
Intron Retention
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17479059-17482063:-
Coord C1 exon
chr7:17481949-17482063
Coord A exon
chr7:17479150-17481948
Coord C2 exon
chr7:17479059-17479149
Length
2799 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
CTGTCTGTTTCACTATTTAGTCC
3' ss Score
7.99
Exon sequences
Seq C1 exon
ACCGATCAGAAGAAGGATATTCTTCCTGTACAAGAAGAATCTGACCTTGAAAAGAAAAGAAGAGAAGCTGAAGCGTTACTTCAGAGCATGGGCTTGACACCGGAGTCTCCTGTTG
Seq A exon
GTAGGAATATTAATAGTATTTTATGAGATAAGTGTTTTATCATTGTTGTTAGTATTTGTGGCAATTATGCGTTGTTTCAGTACATATCACTAGTAATACTTGTAAAAGAAATATTTGCAACTTAGTAGATTATTTGGAGTGTTTTGATTAAAATATCATATATTATATGTAATAAAATATTATAATTACTCTGCTTTTCTATTCCTCTTGCACATTATTTTTCTGATGTTCTTTGTTTGCTTGTTTTTCCCTTTCTGTAATGCCTCATCTTTAATTCTGATATTTTCTTGTGGCGTTCGCTTGTTTTCTTGCTGTGCCCTTTACTTCCTAATTTTTCCTTATCTTAAATACCTGACTGAATAGCAAAGCTAAGCGTAAAATTTAACTGTCAAGGATGATGTTTCACATCTATGTTTGTGTTCCATGAGTTGCTGTATCGTACTGTTGCTTTCTGCCTTTACTTAGCCGCTTCCCTCTGGAAGATGAAGTTGAAGAGGGTGATACTTCAACTCTGCTTTTTTGTCTCTAGTTCTGAAATCAAAGAGGAGTTCAAACTTAGTTTTCAGTTTGGCTCAGTGATGACAAGGGTCTATTTCAACCGAGTTTGCAAACAAAAAGTAATAGTAATTGGTTATGGCTATGGTCTGTATGATTACATCTTCATAATTGCTTTTGGACAATCCTCACGCATTATAAAAACACAGCAAACAACATTAAAGTCGCTTCCACGGCCACATCCACAACATTAATTTTAATGTGTGTTGTGTGTGTTGACTCCTACTTAACTGCACCCTTGCATGCACATGGATACTTGGAGGATTTAGTCTCATCCCTTTCAAGATATCCAAATCAAGCTACAGTGCCTGCTGGTAGCTCTCAGTCCTGCCTGAGACACGAGTTGGGTGCAGGTTGGGCACTGGCATGGTGTGACAGCACACTGGTGATGCACCTGAACTGAAGCTACCTCCCGTCTCACCACCGTGGCCTGCAGTTATGTGAGCTCTTGCTGACACTGTAGGTGGATAATTGCAGATTAGATTCCTTCACAGAAAATTGCTTTAAAAGCTCATAAGGCAGTTACAGTCTTGATAACTGCCAATAAGAGGTGGCTTCCTTATAGGAAAAGAGGCCTTAGTGTATGTTAGAGATCAAAAGCCTACTTACCCTTTTTATAACAAACCACTTGTTTGTGAATGGAAAAGAACGTTCAAGTTGGCATGCTCTATTGGGACAGTGCCGCCAGAGGGCACTGTAGCATCAAACGAAACTACGGAATTTTTTTGGCTGCGCTTACCCCGAGATAGAGTAGTACAGACACTTTTAGATGATAAGTTGCTAATTTCACCTGTTCAGTTAAAAGAGGGTGACGTTAAAGTGCCATCATTTCCAGTTATGCCCAGAAACGTTGGAATGTACAGGCCTACGGACACTGCTTTTAGTATAAACTGTTCAGTAGATGGTGATGGTGAGTTGCAGAACATGAAAGCTTCATACGTATGCATATACACTTATGTATTATGAAGTATAGCTGTATGATTTTTAGACATATATGAAAGTCCCTTTGTAGGTGTGCAATTTTAATAAATCAAGTCCATTAATTAAAAACAGTCAAAATACTGTTTTTCAAATTCAGGATGGAATTTCTGCTAACCAGAACCATGTCTCTGTTTTGGGATAGGATGGAGGCACTCTTCAGAATTCCCAACATAGCGGTGATTTCAGGAAATTCACCTGAAATGTTGCATATCTAAATTCAGAATTCTCCCTCAGTACTCACCCTGACATGATGGATACCAATTAACAGCTGTAATTTGTCTTCAGTCACTTGAAGTTTCTTCTTTGGTGTTGCTAAGGAGTAAATCTGTGCAATGAATGTTTCACGTTACTGAAAAGTGAAGCATGAGAGAAACTTCAGTGTACATCTTGATTCTTAAGCATAAATTTAAGGTTCATTAATAAATTTCACTGTTTCTTTTTTGGGGGAAAAAAAAGAAATTCCTAAAAGAAAAGTTGAAAGATATTTTGTAGTAGCTTTGTGTGGCTTACACTGCATGAGTGCATGGTAACCATTTGTTGTTATGTATCTGTTCCAAAAAAACCATGTTGCTTCTTAGGATGCAGTTGCAGTCTTCATCTAAGTGATGAGAATGAGATGACTTTCATCAACAAGTTCCGGTGTATCACTACCGGGCTGCTTGTCATGTGAAAAGAAAAAGTATGAAGATTTCCCCCCTAAAATGCAGCACTAACAAACATCACTGTAATGCACAGAACTTTGTTGATTTGGTTACAGCTACAGCAAAAATACACTCCGTGACAAAGCCACATTTTGTTGGTACATTTCTGTGATTATATGATTAGAAGCAAAGATGCTAAGCTAAATACTTTCAGTTTTCTGAGAAGTTAAACATTGGTATCAAAGCTATGTTAACAAGTGTCTTTCTCTGATGTGTGAGCAACATGATTTGGTGGAAATTACCATTTGAAAACCGATGCTACCATTTGTTAGAAGTCCAGATTTTAAAAATTTATTTTCCTTTTTTTTTATGCCTTTTCCTCCATGTCTTCTTGTATGCACCAGATGCATAAATACCAAACAACTGCATGAAATCCAGCATGAAATGTTAACAGTGTCTTTTCCCCTCTCTTTCTACTATTCATTTTCATCCATGTATTTTTTTTTTGTTTGCCATCACTTTTTTTTTTTTAATACTTCATGTTGAATTAATTTGAAAACATCCTAAGCTGTGCAACCTCTGCGAGTAGTAACAGCGGATACCTGTCTGTTTCACTATTTAG
Seq C2 exon
TCCCTCCTCCTACCTCTCCGTCTTCCAAATCCGTGAGTACGCCAAGCGAGGCTGGGAGCCAGGACTCCGGTGATGGCGCCGTTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551:ENSGALT00000015547:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]