HsaINT0053165 @ hg19
Intron Retention
Gene
ENSG00000077380 | DYNC1I2
Description
dynein, cytoplasmic 1, intermediate chain 2 [Source:HGNC Symbol;Acc:2964]
Coordinates
chr2:172563057-172563887:+
Coord C1 exon
chr2:172563057-172563074
Coord A exon
chr2:172563075-172563796
Coord C2 exon
chr2:172563797-172563887
Length
722 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CTGTCTATTTCACTATTTAGTCC
3' ss Score
6.62
Exon sequences
Seq C1 exon
TTTTTTCTGAATACTGGG
Seq A exon
GTAAGGAAGTTCCCATAAGTCTTGCCTTGTTTATTTGCATGCATCACTTTATGTTATGCATAATGTCTAGAAGGCATGCTGTTTTATTGCCTGTTTGCATTTTTCACCCAAATTGCTGGAAACTAATGAACATTTTAAAGGAGCCATTCCTTTAGCTGCAGTCATTTCTCTAAATTGATATCTTTTTTTGGGGGGGAGGCAGTGAAATCATTTTAAACATTACTTTTTGAAAGAAAAAATTATTAGACAAAAGTTAATATTTTAAAATAAATCTTGAGAAACTAGAGATTAAATAACTTAATGAAACATATTTCAGAGTTGAATTTTGGCAGCAATTGTAAATAATATTTATAATCTGGTGATATTAAAAGTGAAAAGTTACAAGGGGGAGAAGGAATGCTCTCCTTTGAAAATTAGTGGCCACATTTGGTGATGGATGAGATGAAGATGCATCCTTCCATAATCTTGCCTTTTTAAAAAAATTATAAAGCTCAAATGCATTTTGCCAGAAAAATTGCATGAATCTTCAGCATGCATTGTTAACTTTTTGTCTTTTCCCCTTTCTTTCTGCTGTTCATTTTCATTCATATATTTTTGATTTTTGGTTTGCCATTGTTTTTTTCTTTTTTGTTAATTACTTCATTAAATTATTTTTGAAACGTCATAAGCTGAGCAACCTCTCCGTGTAGTAACAGCGGATACCTGTCTATTTCACTATTTAG
Seq C2 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACTCCAAGTGAAGCTGGAAGCCAAGACTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077380-DYNC1I2:NM_001378:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.976
Domain overlap (PFAM):
C1:
PF142651=DUF4355=PD(3.8=42.9),PF055057=Ebola_NP=FE(4.8=100)
A:
NA
C2:
PF142651=DUF4355=PD(0.1=0.0),PF111503=DUF2927=PD(6.2=16.1)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)