HsaINT0053165 @ hg38
Intron Retention
Gene
ENSG00000077380 | DYNC1I2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:HGNC Symbol;Acc:HGNC:2964]
Coordinates
chr2:171706547-171707377:+
Coord C1 exon
chr2:171706547-171706564
Coord A exon
chr2:171706565-171707286
Coord C2 exon
chr2:171707287-171707377
Length
722 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CTGTCTATTTCACTATTTAGTCC
3' ss Score
6.62
Exon sequences
Seq C1 exon
TTTTTTCTGAATACTGGG
Seq A exon
GTAAGGAAGTTCCCATAAGTCTTGCCTTGTTTATTTGCATGCATCACTTTATGTTATGCATAATGTCTAGAAGGCATGCTGTTTTATTGCCTGTTTGCATTTTTCACCCAAATTGCTGGAAACTAATGAACATTTTAAAGGAGCCATTCCTTTAGCTGCAGTCATTTCTCTAAATTGATATCTTTTTTTGGGGGGGAGGCAGTGAAATCATTTTAAACATTACTTTTTGAAAGAAAAAATTATTAGACAAAAGTTAATATTTTAAAATAAATCTTGAGAAACTAGAGATTAAATAACTTAATGAAACATATTTCAGAGTTGAATTTTGGCAGCAATTGTAAATAATATTTATAATCTGGTGATATTAAAAGTGAAAAGTTACAAGGGGGAGAAGGAATGCTCTCCTTTGAAAATTAGTGGCCACATTTGGTGATGGATGAGATGAAGATGCATCCTTCCATAATCTTGCCTTTTTAAAAAAATTATAAAGCTCAAATGCATTTTGCCAGAAAAATTGCATGAATCTTCAGCATGCATTGTTAACTTTTTGTCTTTTCCCCTTTCTTTCTGCTGTTCATTTTCATTCATATATTTTTGATTTTTGGTTTGCCATTGTTTTTTTCTTTTTTGTTAATTACTTCATTAAATTATTTTTGAAACGTCATAAGCTGAGCAACCTCTCCGTGTAGTAACAGCGGATACCTGTCTATTTCACTATTTAG
Seq C2 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACTCCAAGTGAAGCTGGAAGCCAAGACTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077380:ENST00000397119:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development