GgaINT0051527 @ galGal3
Intron Retention
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15979101-15979654:-
Coord C1 exon
chr5:15979554-15979654
Coord A exon
chr5:15979253-15979553
Coord C2 exon
chr5:15979101-15979252
Length
301 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGG
5' ss Score
5.66
3' ss Seq
TCATGTTTTTATATATGCAGTAT
3' ss Score
5
Exon sequences
Seq C1 exon
ATTGCCCAGCTCCTATGTACTACTTCAACTGCAGCTCAGCGGGTCCTGGTGCCATTGGTTCCGAGTGTCAGAAGAGCTGTAAGACACAGGATATGCACTGC
Seq A exon
GTAAGGGCTTCACCTTCTGTCAGGAGTGTGGACAACATGACTGTGCATGTGTGATTGTCCTGAACAAACGCTGGTGGTAACAGGTTACACTGTTCACAAGACCAATCGCTCCACTGATAACACAGCAGCTGCAGCTACCCACCTAGCTGTGACGCTCGTAGCCTGATTGTTACTAACTTACTGGCACGGCGTTTTGAAAGACAGTCTAAAACATTTGGAGTCCAGTACTAACACTTCTGCTGGTTCCCTGTACGTTCTGTGCATTAATGTATTGCCTTGTATCATGTTTTTATATATGCAG
Seq C2 exon
TATGTCACAGAATGTGTCTCTGGCTGCATGTGTCCTGATGGGCTGGTGTTGGATGGCAGTGGGGGATGTATTCCCAAAGACCAATGCCCGTGTGTCCATGGAGGACACTTTTATAAACCTGGTGAAACCATCAGAGTCGACTGCAACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(51.6=94.1)
A:
NA
C2:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(37.7=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCTCCTATGTACTACT
R:
GTTGCAGTCGACTCTGATGGT
Band lengths:
246-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]