GgaINT0052789 @ galGal3
Intron Retention
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18133879-18134743:-
Coord C1 exon
chr5:18134590-18134743
Coord A exon
chr5:18133948-18134589
Coord C2 exon
chr5:18133879-18133947
Length
642 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
3' ss Seq
TCTGTGCTTGCCCTTTAAAGGTA
3' ss Score
10.03
Exon sequences
Seq C1 exon
CTGGTGGAGAATTGTGTGTGCCTGCTGAGAAACTTGTGTTACCAAGTCCATCGTGAGATCCCCCATGCTGAGCGCTACCAGGAGACTCCTCTGGCCACCACCAACAACGCTGGGCCCCACGCTGCAAGCTGCTTCGGTGCCAAGAAGGGCAAAG
Seq A exon
GTTCGTTGGCTGGTGACATAAAGACACACTTGCTTCAGTGGGGCTTGAGGGCGGTCTGGGTTCTTTGTGATCCGTTCTCTCATCTCTCGTGTGAAGGCTAAATTGTGGCTTTCTCTGGAAACACGGTGACTTGTGCCTTCCCTTGCTTTGGGAAGTTACTGCTTGGCTCACTCAAAGCGTTTGACACGAGCTAATGGTGCCCTTGTGGGTTTCTGTGGTGATGGGACGGTGGTGGATAGATAACCACTAACTTCACGTCTTCCCTTTTCTTGTGTGTTGTCCCTTCCCCTTCCCTTCGCTTTCTTGCCAAACGATCTGCCCCATGATGCTGTCGGCACTTCTCTCCTCCTGCCTCCCCTCTCTCCTGTCCTCCTCTCCGCTTCGCCAATAGACGAATGGTTCTCCAGAGGTGAGTGTGCTCTTGATTTTAATTTTTCCGTGGTGAAAATGATTGGGTGCCTTCCTGAGCTCTTTGTTCCCCTGCAGTTGGCCTTGTGCTGCCTGCAATGTGACTAATGTCCTTGGTGGCATGTAGCTTCTGCTCACCTCTGGGCTTGTTCTTGTAGCAAGTGGCAAAAAGCTGCTGGGCTGATGTGGATGGGAAAATGAGATGTCTTATGCCTCTGTGCTTGCCCTTTAAAG
Seq C2 exon
GTAAAAAGCTCCCTGAAGACCCTGGTGCAGATACAGTGGATTTTCCTAAAAGAACAACTCCAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.573
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(2.5=4.2)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGAATTGTGTGTGCC
R:
CTTTGGCTGGAGTTGTTCTTTT
Band lengths:
222-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]