BtaINT0045091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82318658-82319680:+
Coord C1 exon
chr15:82318658-82318811
Coord A exon
chr15:82318812-82319611
Coord C2 exon
chr15:82319612-82319680
Length
800 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTTTTTTAAATTTCCAAAGGGA
3' ss Score
7.71
Exon sequences
Seq C1 exon
CTTGTCGAGAACTGCGTCTGCCTCCTTCGGAACCTGTCCTATCAAGTTCACCGGGAGATCCCGCAAGCAGAGCGCTACCAGGAGGCGCCTCCCAGCGTCGCCAACAGTACCGGGCCGCATGCTGCCAGCTGCTTTGGGGCCAAGAAAGGCAAAG
Seq A exon
GTGAGGCTTGCTTCCCGCTCCCCCGCTCGTTCGTGCAGGACGGGGAGAGGAAGGTGTCTGGCTGTGCGTGTGGAACGCGTGCTGAGCAGTGCTGGAGTCTGCCCAGTCGGGGATGTCCCCTGTGCCGTGTGCTTCACGCTGGTGCTGGTGGTGGTGGTGTCAGGATCAATAGTTGGGCAGTGAAGGCTGAGAGCCAGCTGACCTGGGGCCTTCTCCCCCTCCTCCTCTGTTTCCTGTGTTTGTCTTTTCCTCTGTGCTTCCCTGCTTGTTTTCCCGTGATCCTGTTGACAACTCTCTCCTGCGTTTTTCTTCCTTCATTTCTCTCCTCTCCTTTCCACCTTGGGTGACGCGCTGGAAGATGAGTGGTTCTCCAGAGGTGAGTGGAATCTTTTAAGCGGCTTACCTACCTCTAATTTGCATGTTTGGGTTTTAGCGTTCTTGGCATTTCCTTGCCTAACCCTTCCCTGTGGATGCATGTAGGAAAATTCATTGGAGGAAGGCCGCTGAGCCTGGTCGCGCTCTTCTGAGCGAGCGGCTCCTGGCATCTGTTTCTGGGCAGCAGCCCCTGTTCCCGGCACGGAGGACAGCAGCAGCACTAGCTGCCATCCTTAGCTCACCCGGCTGCTGCGCGTGTTCTGCTCTTGGGGATCCTGTCTTGGTTTCTTTGTTGTTTTGTCTTATGCCCCTCTTGATGCATCTCTGATGGGAACATTCTGACTGAAGAATAAAGAATATACTGAGTGGACTCTTCCTTTCTTAAACTTCCTTCTCCCCCCACTTTCTTTTTTAAATTTCCAAAG
Seq C2 exon
GGAAAAAACCCACAGAGGATCCAACAAACGATACAGTGGACTTCCCTAAAAGAACTAGTCCTGCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=NA C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(2.5=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCGAGAACTGCGTCTGC
R:
CTCGAGCAGGACTAGTTCTTT
Band lengths:
223-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development