GgaINT1010755 @ galGal4
Intron Retention
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16249219-16250083:-
Coord C1 exon
chr5:16249930-16250083
Coord A exon
chr5:16249288-16249929
Coord C2 exon
chr5:16249219-16249287
Length
642 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
3' ss Seq
TCTGTGCTTGCCCTTTAAAGGTA
3' ss Score
10.03
Exon sequences
Seq C1 exon
CTGGTGGAGAATTGTGTGTGCCTGCTGAGAAACTTGTGTTACCAAGTCCATCGTGAGATCCCCCATGCTGAGCGCTACCAGGAGACTCCTCTGGCCACCACCAACAACGCTGGGCCCCACGCTGCAAGCTGCTTCGGTGCCAAGAAGGGCAAAG
Seq A exon
GTTCGTTGGCTGGTGACATAAAGACACACTTGCTTCAGTGGGGCTTGAGGGCGGTCTGGGTTCTTTGTGATCCGTTCTCTCATCTCTCGTGTGAAGGCTAAATTGTGGCTTTCTCTGGAAACACGGTGACTTGTGCCTTCCCTTGCTTTGGGAAGTTACTGCTTGGCTCACTCAAAGCGTTTGACACGAGCTAATGGTGCCCTTGTGGGTTTCTGTGGTGATGGGACGGTGGTGGATAGATAACCACTAACTTCACGTCTTCCCTTTTCTTGTGTGTTGTCCCTTCCCCTTCCCTTCGCTTTCTTGCCAAACGATCTGCCCCATGATGCTGTCGGCACTTCTCTCCTCCTGCCTCCCCTCTCTCCTGTCCTCCTCTCCGCTTCGCCAATAGACGAATGGTTCTCCAGAGGTGAGTGTGCTCTTGATTTTAATTTTTCCGTGGTGAAAATGATTGGGTGCCTTCCTGAGCTCTTTGTTCCCCTGCAGTTGGCCTTGTGCTGCCTGCAATGTGACTAATGTCCTTGGTGGCATGTAGCTTCTGCTCACCTCTGGGCTTGTTCTTGTAGCAAGTGGCAAAAAGCTGCTGGGCTGATGTGGATGGGAAAATGAGATGTCTTATGCCTCTGTGCTTGCCCTTTAAAG
Seq C2 exon
GTAAAAAGCTCCCTGAAGACCCTGGTGCAGATACAGTGGATTTTCCTAAAAGAACAACTCCAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=NA C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(2.5=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGAATTGTGTGTGCC
R:
CTTTGGCTGGAGTTGTTCTTTT
Band lengths:
222-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]