HsaINT0042897 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:57805882-57806478:+
Coord C1 exon
chr11:57805882-57806035
Coord A exon
chr11:57806036-57806460
Coord C2 exon
chr11:57806461-57806478
Length
425 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTGGGTGATGCACTGGAAGATG
3' ss Score
-1.15
Exon sequences
Seq C1 exon
CTTGTAGAGAACTGTGTTTGCCTTCTTCGGAACTTATCATATCAAGTTCACCGGGAGATCCCACAGGCAGAGCGTTACCAAGAGGCAGCTCCCAATGTTGCCAACAATACTGGGCCACATGCTGCCAGTTGCTTTGGGGCCAAGAAGGGCAAAG
Seq A exon
GTGAGTCTTGGTTCCTGTTTCTTAGTCTTTAATGTGGGATAGGGAAAGGAAGGAACACTTTAGCTTAAGGTACAAAATACTTGGCAACAGTATGGGAGTCTGCCTGGTTATGGATGTCTTTTTGGTTTGCTGCTTTCCCTGTGTTGTGTGCTTCATTCAAGGTGTGGTGATGGGATGGTGGTTGTGATGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTATCAATGAGTGGGGCAGTGGAAAATGAGAACTCAACTAATCTGGGACCTTCTTCCCCATACGTCCTTTGCATTTTCTGTGTTTTTCTTTTCTTCTCTGTGCTTCCCTGCTTATTTGCCCATGATTCTGCTGACATCTTTCTCCTGCATTTTTCTTATTTCATTTCTCTTCTCTGCTTTCTACCTTGGGTGATGCACTGGAAG
Seq C2 exon
ATGAGTGGTTCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561:ENST00000529919:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development