GgaINT0052793 @ galGal3
Intron Retention
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18131513-18131926:-
Coord C1 exon
chr5:18131734-18131926
Coord A exon
chr5:18131628-18131733
Coord C2 exon
chr5:18131513-18131627
Length
106 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
TTCCCTTCACTGCTTTCTAGGAA
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTAAACATGCCATCCCCAATTTAGTGAAGAACCTGCCTGGAGGCCAGCAGACTCCAGCCAAAAACCTCTCTGAGGATACAGTGGTGTCCATCCTCAATACCATCAATGAAGTCATTGTAGACAACCTTGAGGCTGCCAAGAAGTTGCGGGAAACGCAGGGGATTGAGAAGTTGGTGCTGATCAACAAAACTGG
Seq A exon
GTAGGCTCTGCTTGAAGGGTGGTGCAGGGGTGGAGAGGGGCTTTTCTCAAGGCTGCTTTGAGGCTGTGGATATTCCCAAACATCTCTTCCCTTCACTGCTTTCTAG
Seq C2 exon
GAACCGCTCAGAGAGAGAAGTCCGAGCAGCTGCCGTCGTCTTGCAGACAGTCTGGGGATATAAAGAGCTACGGAAGCCCCTGGAGAAGGAAGGCTGGAAGAAGTCAGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGACTCCAGCCAAAAA
R:
TTCCAGCCTTCCTTCTCCAGG
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]