BtaINT0045095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82321682-82322338:+
Coord C1 exon
chr15:82321682-82321874
Coord A exon
chr15:82321875-82322223
Coord C2 exon
chr15:82322224-82322338
Length
349 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TGGTTTTATTTCCCTAAAAGGAA
3' ss Score
6.37
Exon sequences
Seq C1 exon
GTAAACATGCCATTCCTAACTTGGTCAAGAATCTGCCAGGAGGGCAGCAGAGCTCTTCGCAGAATTTCTCTGAGGACACTGTGGTCTCTATTCTGAACACCATCAACGAAGTTATCGCTGAGAACTTGGAGGCTGCCAAAAAGCTCCGGGAGACCCAGGGTATTGAGAAGCTGGTTTTGATCAACAAATCAGG
Seq A exon
GTGAGAGTAACACTTACCGGTCACAGCTGGGGCACGTGAGTGCGGGAGAGGGCGCTGGGGAGGGGCTCTGCCCTGTCGATTCTGCAGGCTGTTTTCCCTTTTTTACCTGTAAAGAATGAAGGAGATATTGCTCTCTTTTCTGTCTTAATGTTGACCCATAAATTGATAAGACTCTTCCGTCAGACATTTTTTTGTTACTGTTTGAGTTAAAATACTGGACTTGGTGAAAACCTGGTCTTGCCTATTTGGGGACTTATATTCTTATGTTACATTGTATTAGAGAGGACATGCTCTCAGCTTCTTTCCTGGTCTTACATCCACATTCCATCTGGTTTTATTTCCCTAAAAG
Seq C2 exon
GAACCGCTCAGAAAAAGAAGTTCGAGCAGCCGCGCTTGTGTTACAGACGATCTGGGGGTATAAGGAGCTGCGGAAGCCACTGGAGAAGGAAGGCTGGAAGAAGTCAGACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCATTCCTAACTTGGTCA
R:
TGAAAGTCTGACTTCTTCCAGCC
Band lengths:
303-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development