GgaINT1010759 @ galGal4
Intron Retention
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16246853-16247266:-
Coord C1 exon
chr5:16247074-16247266
Coord A exon
chr5:16246968-16247073
Coord C2 exon
chr5:16246853-16246967
Length
106 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
TTCCCTTCACTGCTTTCTAGGAA
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTAAACATGCCATCCCCAATTTAGTGAAGAACCTGCCTGGAGGCCAGCAGACTCCAGCCAAAAACCTCTCTGAGGATACAGTGGTGTCCATCCTCAATACCATCAATGAAGTCATTGTAGACAACCTTGAGGCTGCCAAGAAGTTGCGGGAAACGCAGGGGATTGAGAAGTTGGTGCTGATCAACAAAACTGG
Seq A exon
GTAGGCTCTGCTTGAAGGGTGGTGCAGGGGTGGAGAGGGGCTTTTCTCAAGGCTGCTTTGAGGCTGTGGATATTCCCAAACATCTCTTCCCTTCACTGCTTTCTAG
Seq C2 exon
GAACCGCTCAGAGAGAGAAGTCCGAGCAGCTGCCGTCGTCTTGCAGACAGTCTGGGGATATAAAGAGCTACGGAAGCCCCTGGAGAAGGAAGGCTGGAAGAAGTCAGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGACTCCAGCCAAAAA
R:
TTCCAGCCTTCCTTCTCCAGG
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]