RnoINT0043145 @ rn6
Intron Retention
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72010329-72011093:-
Coord C1 exon
chr3:72010901-72011093
Coord A exon
chr3:72010444-72010900
Coord C2 exon
chr3:72010329-72010443
Length
457 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GGTGTTACTTTCCTTCATAGGAA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GCAAACATGCTATTCCTAACTTGGTAAAGAATCTGCCAGGAGGTCAACAGAACTCCTCCTGGAATTTCTCTGAAGACACCGTGGTCTCTATATTGAACACCATCAACGAAGTTATTGCTGAGAACTTGGAAGCCGCCAAAAAGCTTCGAGAGACCCAGGGTATTGAGAAGCTGGTGTTGATCAACAAATCAGG
Seq A exon
GTGAGCTTTTTCTTAATCACAGCTAAGAGAATTTGAGTTTGAAGAAGAGTTTTTAGAAAATAACTTTTCTCTTCCATTCTGTGAGATTACTTCTTCCTATAACATGTGGAGAGATATTGCTCTATTTTCATTCTTAGTGTCGGTCTGTAAATTGGTATGGACTGTTACATCAAAGTAGTTTATGTCAGTGTTTCATACAGTATAAGAGTTGGTGAAATTTGGCTTCACCCATTTTTACATTTTTATATCCTTGTGCTGTTAGAGCAGTAGTTTTCAACCTGTGGGTGTCAAGTTATGAAGTAGCTATAAATATAATTTTATGTCTGGGGTCACCATAACGTGAGGAACTAACTATATGCAGCATTAGGAAGGTTGAAAACCACTTTGTTAGAGAGTAAAAGTTCTGAGATCCCTGGTCTGAAAACTAAACTTTGTATGGTGTTACTTTCCTTCATAG
Seq C2 exon
GAATCGCTCAGAAAAAGAAGTCCGGGCAGCAGCTCTTGTCCTGCAGACAATCTGGGGCTATAAGGAGCTTCGGAAGCCACTGGAAAAAGAGGGGTGGAAGAAATCAGACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790:ENSRNOT00000064009:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACATGCTATTCCTAACTTGGT
R:
AGTCTGATTTCTTCCACCCCTCT
Band lengths:
303-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]