GgaINT0052794 @ galGal3
Intron Retention
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18130890-18131627:-
Coord C1 exon
chr5:18131513-18131627
Coord A exon
chr5:18130978-18131512
Coord C2 exon
chr5:18130890-18130977
Length
535 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GGTGCTGTCTGGTGCTCCAGGTG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GAACCGCTCAGAGAGAGAAGTCCGAGCAGCTGCCGTCGTCTTGCAGACAGTCTGGGGATATAAAGAGCTACGGAAGCCCCTGGAGAAGGAAGGCTGGAAGAAGTCAGATTTCCAG
Seq A exon
GTATGGGGAGTGGTGGTGGAGTACCCTGTTGTAGCTTGGGTCCTGCTGCGGGGAGAAGGTGCTCCAGGAACTCAGCGGTGTTTGATTTCAGCTCTTCTCTTGCTGCTGTCACTAGAGACCCTTGAGGGTGTCCCCTCTGCCACTTCTTAGTGGGTGGATGGCAGTGGAGCAGAAACACTCTGCGAAGCATTAAGCCTTGAATATCAGATCTAGTAGCAGGGAAAATCTGCAGCACTAAAGCCGTTGTGGCAGTACTGAGGGTGGGGGAAGAAAAGGTCCTCCAGTATTTGCTTTCCTTCCTAAAAGCTGCAACTGCCTCCTCAAGGCTGGGTGCTGTCCCGACCCACCCTAGGTAGACTGCCTCCACCCTTGATTGTGGGTACACCCAGGGGCTTTGGAGCTCCTTCTGGTCCCTTCAACTTCAGGTCCTTCGCTCAACGGCTGTGGGAGGGAAGCATTGCTGGGTCTGCTGGGGCTGTAGGGCTGCCATGTGCTTGGTGGATGGAGTATGAGTGGGTGCTGTCTGGTGCTCCAG
Seq C2 exon
GTGAACCTCAGCAATGCCTCTCGGACACAAGGGGGAAACTCATTTGATGACAGCACCTTGCCTCTCATTGACAGGAACCAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAGAGAAGTCCGAGCA
R:
TTTGGTTCCTGTCAATGAGAGGC
Band lengths:
190-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]