BtaINT0045096 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82322224-82322925:+
Coord C1 exon
chr15:82322224-82322338
Coord A exon
chr15:82322339-82322837
Coord C2 exon
chr15:82322838-82322925
Length
499 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CGTTTCGCGTGTGCCCCCAGGTG
3' ss Score
10.99
Exon sequences
Seq C1 exon
GAACCGCTCAGAAAAAGAAGTTCGAGCAGCCGCGCTTGTGTTACAGACGATCTGGGGGTATAAGGAGCTGCGGAAGCCACTGGAGAAGGAAGGCTGGAAGAAGTCAGACTTTCAG
Seq A exon
GTAGAGTGACTCTTGGGACTGAGGCTTTCCCCTCTCTTCCCCTTGGTTTCAGGTAATGCTTCTTTCTTTGCTGCTTCTGTTTCACTGTCACACTGAGTCTACTTTTGACCCACGTCTCTGTGTAAAGAAATCATTTATTTACTTTTCCCCCCAAATGGTGCCGGAAGTAGTCCTGGTCTTGCGCTGTGTCGTAGCGCAGTGTGAGTGCTGCTGGCAGTGTTGACCGGTGGCCCTTTGAAGGAGTTTGCCATTTTCTGAGACTGTATTTCCTTTGGATAGTGTGAGCGTTTGGTGCCTTTGTAATTGGTTCAGAAACACAGATCAAAGCCATCGCATCCTACTTTGTCTCAGTATATAGGTGTTTGTTTAACCCGTGCAGGTCACCTTTTGGTAAGAAGTGTACTTGGGAATAAGGCCCTAAAGTCTGGGCCCATTGAGGAGCAGGGCGTGGGTGAATTCGGTACTCTGCGACGTGACTGCGTTTCGCGTGTGCCCCCAG
Seq C2 exon
GTGAGCCTGAACAATGCTTCTCGGAGCCAGAGCAGCCACTCCTATGATGACAGCACGCTCCCTCTCATTGACCGGAGCCAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTCAGAAAAAGAAGTTCGA
R:
ATCTCTGGCTCCGGTCAATGA
Band lengths:
198-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development