GgaINT1010760 @ galGal4
Intron Retention
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16246230-16246967:-
Coord C1 exon
chr5:16246853-16246967
Coord A exon
chr5:16246318-16246852
Coord C2 exon
chr5:16246230-16246317
Length
535 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GGTGCTGTCTGGTGCTCCAGGTG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GAACCGCTCAGAGAGAGAAGTCCGAGCAGCTGCCGTCGTCTTGCAGACAGTCTGGGGATATAAAGAGCTACGGAAGCCCCTGGAGAAGGAAGGCTGGAAGAAGTCAGATTTCCAG
Seq A exon
GTATGGGGAGTGGTGGTGGAGTACCCTGTTGTAGCTTGGGTCCTGCTGCGGGGAGAAGGTGCTCCAGGAACTCAGCGGTGTTTGATTTCAGCTCTTCTCTTGCTGCTGTCACTAGAGACCCTTGAGGGTGTCCCCTCTGCCACTTCTTAGTGGGTGGATGGCAGTGGAGCAGAAACACTCTGCGAAGCATTAAGCCTTGAATATCAGATCTAGTAGCAGGGAAAATCTGCAGCACTAAAGCCGTTGTGGCAGTACTGAGGGTGGGGGAAGAAAAGGTCCTCCAGTATTTGCTTTCCTTCCTAAAAGCTGCAACTGCCTCCTCAAGGCTGGGTGCTGTCCCGACCCACCCTAGGTAGACTGCCTCCACCCTTGATTGTGGGTACACCCAGGGGCTTTGGAGCTCCTTCTGGTCCCTTCAACTTCAGGTCCTTCGCTCAACGGCTGTGGGAGGGAAGCATTGCTGGGTCTGCTGGGGCTGTAGGGCTGCCATGTGCTTGGTGGATGGAGTATGAGTGGGTGCTGTCTGGTGCTCCAG
Seq C2 exon
GTGAACCTCAGCAATGCCTCTCGGACACAAGGGGGAAACTCATTTGATGACAGCACCTTGCCTCTCATTGACAGGAACCAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAGAGAAGTCCGAGCA
R:
TTTGGTTCCTGTCAATGAGAGGC
Band lengths:
190-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]