GgaINT0056372 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52437153-52439945:-
Coord C1 exon
chr5:52439866-52439945
Coord A exon
chr5:52437243-52439865
Coord C2 exon
chr5:52437153-52437242
Length
2623 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GTTTGCTGTCCCTTTTGCAGACT
3' ss Score
10.94
Exon sequences
Seq C1 exon
GTCTCAAACTTCCAGACTTTCAGGATTCCATTTTTGAATATTTCAACACCTCTCCTCTTGCACGTGATCTGACCTTCAGA
Seq A exon
GTGAGTTATTACAAAAACTGCCTATGAAGATGAGATAGCTGCGTTGTATTTTTATTACCTAAAAGTAACTCTTCGGCCCTATATTACAAATTTGTATCTGGTGTGTTAGTCAAGTTAGCGTGTTGTAGAATTGAATGACCAGTAGACGTCAGATTAATTGGCATTTTGAAGAGAAACTGCCACCTTTAGGAAATATTCCCAAAAGCTTGCGTTATATATTTTTCATTCTATTCTCTTTAAGTCAGTCTCAAGCCTTTAGCTGAATAATATACATTCAGGTTGTTTTAGAAAGGCTGGCACAGCCTATTACAAATAAGGGATTAAATACTTTGGAGTTGGAAGATGCTAGTTAACATTTAAAAAAAAAAAGTAATCACACAGTTCAAACAGTGCTTAAACAAATATATGGAATTGTTGACTCCAGATCTTTGTGGGGTTGGTCAGAGTAGAAGGGACTGGGAAGAGAATCAGAGGACCCACAGATGATGGTACTGTAAGTTCATTGTGACACACCCTCTGATCCTTAGAAAACTAATCATACACATAGCAGCTCCGAGTGGGTGTTTTGCTTAGAAAAATTTGTGCATTCCCCAAAGAAGCAGCTGTTAAATGCAACACAGAATCACATCTCCTTACTTCATGAACTCCTGATCCTTGAAGATTTGAGATTTATTTTATTTTTTTTTTTGCAAAACACATTGTCAGTTCAGGATAAAGCTACGAGATGGAACTGGAAAGAACGATCTTTTATGTTTATGGAACTGAGTTAAAAGGTCTGAGGTTAAAACCTAATCAATCTGGTGAGATAGTATATGTGAAATGTGTACATTCTCTATCGTTTTTCAAATTCTTATGGTGCCAAAAAGAAAGCCCATGGACATGCTGTGATATTTGCATGTGTGTTCTTTGTGTCCGTGCTGTTCTCAGTTAGAAAATGTCCACGCTGGCTTTCTTGCTTGAGCAGCGAGATGAACTATGTGAATGAGGTGAAGAGAGAAACGTTACATACGTACTCTACAGTCTGGATAGCTTTTAGCTACCAACTTTGATATTGCTTTATAATCACCAAATACACTTAAAGTAGTAACTTAGAACATCAAGATGGTAACTACTAAAGAGCCAGCAATAAATGCATTCTCACTGATCAAATGCAAGTGGCATTTTTTGATGAATTACATTAAAATTCCTGATACAGTACTTAGTAACTGCCATTAACAGTCTTTTTTCACACCACGTACATTTAAGGACCATCTATGTCATCTGGTCTAGGTTAGTTCAGTTTAAATGAATATCATTGGACCATATAAAACATTTTATTTAGCTAGCCTACTGGTATTCCATCTGAAGTTTTTCTGTGGGTGATAAGTGATCATTTTTATCCCTCATATCTGTTACAACAAAGGATTCTGTTTCTTCTTCGTCTACATCTTCTCTGCTAGCCTTTTGGGAAGAAGTAAGTTCTTGCTAGTAGTTTTGTCTCCTTATTTTGTTGTGACCTATCATAGTAAAAATGGCCTTCTAAAACTAGATGTTGCTTCTTTAGCGTCTCTATAATTTAGTCCACTAAGTAGAACTAGTTTAGTTTTCATTTAATATGTTTTTACAGGCTTATTATTTTAGATTTTGACTGTCTGTATGGCTAAAGCTGAATCAAGCCTAGCATTTTAAAATTGTTCATATTACATAATGGTATAATTTGATTTTCAGTGGCCCAGCCCTACGAATCAATTCATAACAAACAAACAAAAAATAACAAATACCCAAATCTATTTAGTGAGCTAACTGAATTTGAGCGATCTTCCTGTTGAAACTGGCTGGGAAGTGAGTGATTCATTACTCATTGCCTTTAGTGCTAATTACATCATTTATGTGAAGTCTAATCTGATCTTTGTTAATCATGATTTCCATGATGTCCTCAGAGTACAGTAATACAGCACCCTGCTTCCACACCCAGCTTCTTCAGCTGTGGAATTGTAGCATACTTCCCCCTTGTGCTGGCAATTAGTAGTTGCTAATGTAAGTGTGAAATTAAGAGATAGCTTCTAATGGGTGCTAGTCTTAAATTTTAGTGAAATATAGGACAGTGTGATTAAGACAACGTGATTATTTTTAATTATCAAAGTGGAAATAAGATGAGCAATCGTTTAAAAAAAAAAAAACTACTTAGTTTTAAGAACTTTGTGTAGTATTACTCAAGTAATTTTTCTTGTGGTGGCTGCTATGTGCTAGAAAAATCTTAGTGTAGCATAAACTACCGTGAGAAATGAGCTGTTTTATGGATTACTGCCAAGCTTCTCAGACGTCATTCCATACCTGCCTGCAAGAGAATCAGCACAGTCTTTCTGGGAGAAGTTAGAGTATTTATGCTGCCTACTACTGGGTTTTGCATATCTCAGTGCTTCCAGCTTTACAGCTTTTCCATCAGGTGGCAGGATTTGTTCTGAGGAAGGATTTTTTAAGAGTATAAAGTCGTTAAGTGTATGCATACAGAAATGAACAAAGTTTCTCAGTTATTTCTGCAGTGAGCTGTTCATTGTAGCTACTGTGAAATTCCATTTTGTTGGCCTGAGAACACTTCATCGTGTCTGTGGTATATCTAACATGTTTGCTGTCCCTTTTGCAG
Seq C2 exon
ACTGGCTCCATTAGTGAGCAGGAAACACAGGGTCCCAAATCAGAAGTTTCGCCATCTACTTCAGTTGTAACTGCAGAGCAACCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]