HsaINT0031684 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102954602-102959710:-
Coord C1 exon
chr14:102959631-102959710
Coord A exon
chr14:102954689-102959630
Coord C2 exon
chr14:102954602-102954688
Length
4942 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTCTTTCTTGGTTCTCACAGACC
3' ss Score
9.5
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTTCAGGATTCCATTTTTGAGTATTTCAACACTGCTCCTCTTGCACATGACCTGACATTTAGA
Seq A exon
GTAAGTCATTGTTTTTTTTTTAAGTGACAGATGAGTTTATGATAAGTTAGAAATAGTGTCATATATGATTTTACCACTCATGGGGCCACAAACACACCAGTAAATATACATTCAGTGTTTATCTCAGCGTTGTGCTAACTGTGTAATTGACCCACATGTAATCAACCCACATTAAACGCATCAGGTGACAGACATTTAGGGTATTTGAGGTGCTCCCAGAGAAGCTTTCTCAACTCAGATTAAGTAGAGATGAGATTAAGAAAGTGCTCAGCCTCTTCAGGGAGAAATCTGCACTGGCCTCAGCTGTGTAGTGAGTATTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACTTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGCGAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTGTAGCGATTATTTCAAGAAAATAATACAAATTCTCACACTGGGATGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAAGTGGGAGGATCACTTGAGCCCAGGAGTTCAAGACGAGCCTGGGCAATATAGCGAGACCCTATCTCTTAAAAAAAAAAATCCCACACTAGAGCGAATAAAAATACTTTAGTTGTGTTTCCATCTGTGTAGCTGTAGAGTTCGGCATTGGGGATCGATGGGAAAGGTGGTTGATGGGAACAGTCTGGCACCAGGTGCCTTGCCGAGACCCTCACAAGGAGGCCAACCCCCTCAGGCAGTCGGAGCCGCTGGTCATCTACTTGGGAATTAGCTGTCGAGTGAGGAGCAGACCCCACTGCCTCCCTCCATGGGCCGCAGGTTCTTGGTGGCATTCCGTGGAGGCAGGACAGCCTTTCCTCCTCTTTGAAACCTGTAGGGATGCACCCTTGATAGCAGCACGCAAAGCATATTGGAGCAGGGAGAGTGGAGCTCACTAATGGAACTCCTGATGGGGTGCAGGGTGGGGAAGGTGGTTCCAGCCTTTGATTTAGAAAACTCCAGCCCTGCAGGCGAGTGGGAAGAATAGGGTGCATGTGTACATGTCCCTCACCTGGGGTTTTGCTACATCTGCTTTCTCTCTCTCAACATAAGAGACTTTCTTCCTCTGAAGTATTTGAAAGCGACTTGAAGGTATCAGCGACCCCAACATACTTCAGCAGTTATTTCCTACGATTGGGGCATTCTCTCACATAACCACAGTGTCACTGTCATCAGGCATTCTGTGCTGATGCCGTGGGACAGCCCATATCCATGTGTCCCTTGTCGTCCCAGGAATGCCCTTTCCTGCTGGCTTTTCCTCCTAGTTCTGGATCCATCTGGAGGTCATGAATCGCATTTAGTCTTTTGTTTCCTTTAATCTGGAACAGTTCCCCATCTGTTCCCTTTTATGACAATGATATTTTGGTGTTACCCAGGCCAGTTGTCCTGCAGAATGTCCACTCTGGGTTTGTCTGATGTTTCATCTTCATCAGTTGTGGGTTGAACCTTTGGCACAAACTCTCCTCAGGAGGAGCTGTGCCCTTTCCACGCACAGAGGCCGGCCTGCCCAGGGTGGGTGATGCCAAGTCTGATCGTTGGGTTGAGGTGGGGTTGGCTAGGGTTGCTGCCTGTGTGAGTAGGGGGCAGTCAGCAGGTGCCCATGTGGGCATCTGCCCGTAGCAGCCTCCCTTGGGGTGGACTCTTAGCATCCTGGCCTGTGTCTGTCATTACAACACCCAAGCAGGCTTGCATTGCTCACAGCCACTCTGGACGCACACCTGTTCACCTTCACCTGTCAAAATGTTTGTTTGTTTTATCAAACTGGCAATGCTTGTCTTTTCCCTGAAATCCACAGTTTTGAAGAAGCAAATCTATTTAACCGGTAAGTGCCCGCCAGATCTTTGATAAGCCTGTTTCTGCACAAGTCATTGCCTCTCTCGTTGCTGCGGAGCCGGGCACTGCTGTGGGGAGGAATAAGTGGATTCCAGAGAACCAGAGATGGTGCTTGATCACTGAATGGAGGCGGCCAGGAAAGCGGTAGCTTTCTGTAACATTAACAGAGTAGAGGGCCCGGTAGCAAGTGAGTTTACAGCCAGTACTGTCCATGAGTGTGTGAGTCACAGCTGTGGAGAGTGGGCAGCAGAGATGGAGACAGAGGCGGCATCTTCATGCCTCATTCTCTACAGCCAGCACGCCTGCCCTTGCTAATCCCTCATCCCTCCCTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTTACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAGTTTCGGCTCACCACAACCTCCACCTCCCAGGTTCAAGCAATTCTTGTGCCTCAGCATCCCAAGTAGCTGGGACTACAGGCACGCGCCACTATGCCCGGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTCGCCCAGGATGGTCTTGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCTGGCCCATAATTGATTTATAAATTGTGATATAAGCACACATAACATAAAACTTACCATCTTAACCATTTTTTAGAGTCAGGGCTTCCTTCTGCTGCCCAGGCTGGAGTGCCGTGCCACCATCATAGCTCACTGCAACCTCAAACTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGCACTACAGGTGCTCGCCACCGCACCCAGCTAATTTTTAAATTTTTGTAGAGATGGATTCTTGCTATATTGCCCAGACCGGTCTCAAACTCCTAACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCGTGCCTGGCCGCTAATCCCTCTGTGATTTAAATGGGAAGGCATTTATTGTTGAACAGAAAAAACCCTCCATCAGGGGCTGGGTCTGTTAGAGCTTCCAGACTCTTTTGAAAATTGTCTTTGAGAAACTTCTTATCCCACGCTGCCTGCATGAAACATGTTGGTTTTTACTAGAAACAGTTTGTCACCAAGATTAAGTCAATATATCTTCATGCCAGTGTTGACTGGGTGGGAAATGATGTTTGTTCCTCCTGTCTGTTACCTCCAAGGACTCTCTCTCCTCCTCGTCTGCATCTTCCCTGCTAGCCTTTTGGGAAGAAGTAAGTGGCTGCCAGCGCTGGCTTCCCGCAGCTTTCACTCCTGTTAGTGCACAGCCTCCTCAATGTTCCTGTTCCTGAATCTGCATCCCTTTGATTAATTAACCAACTAAATGAAACGAGTGGGGCTTTTACATGCCTAAAATTAATATTCTTTTTCTCATTTATCTAAAGATGGAACCGTAACACTTAACATACCTTGTTTATGGGGCAGATTTGCTTACATTTTTGAGCTTTGGTAATTAGCCAGTCGAGCTAGCCTTTCCCTTGTGAATTTGCAGTACACAGTTGTGTGTGTGTTTTATGTGTGTATGCTGCCATCCCATCTGAATTTGGCTCCTTCCTCAGTGGCCTAATTAATTGCAACTGTTGGAAAGTGTTTATCTGATTTGGTTCATTGGGATTCTGATGTGGAACACAAAATACAGCTGTCAATGCTTTAGGCGCCTACCCAGCCATGTCTGTGTCCCATCACACTGCTTGCTGGTGCTAACACTTGCTACTCAGCATACCTACATGTGCGTCTGTAAACAGCAGTGGCCTGTGATGATAAACTATTAGTTTCAGGAATACTTGTTGAAATAGAGTTGTTTTTAAGTGGTTTCAGAGTGTAGCTTTAGCTTCAAATAAATCACTGTGAAATTAGAACTCTTAATTTGTTAAAACAAAACATTGCTTCCCTGTGTCATAAAATTTTCAAGGAAATTCTTAAATCTACTCATGGGCCCACCGACCTCTGTTGATGTTCGAATTTCTTCTTGATCCTTGAAATGAGGTTAAGAAGCATTTGGCTATTTGATCTTTTCTTCTTTCTCTTTTTCTTTTGAGACAGTCTTGATTTGTTGCCCAGGCTGGAGTGCAATGACTTGATCTCGGCTCACTGCAACCTTCTCCTGGGTTCAAGCGATTGTCGTGCCTCAGCCTCCAGAGTAGCTGGGATTATGGGTGTGTGCTAGCACACCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAAATCCTGACTTCAGGTGGTCTGCCCCCCTCAGCCTCCCAAATTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTGGCTAATTGATCTTAAGGCTGCTAGGCTTAGATAACATTACTTATGAATAAAGGTCAGGAAGGATCAGCATTTCCAGGTCTTGCCCTTTCAGTGACCGGGGCAAGGAGGCTGCAGGAGGGGGCGGGTATGCTCAGGGCTGTGCATTAGAGGTGTCTCCAGGCAAATTCTCACCTCAGCGGGGTGACTGTGACTTGTCAGACTCCACCTGCCCACGCAATCACCACTCAGCTGAGGAAGCCAAGTGCAGGGGTCCTCAGGGCAGGCCGGCCAGCTGGGAGTGGAGCAGGGGTCTGTGAGGAGACCCAAGGGGTGATAGGATCCAGGAGTAAGAACCGCTGGGACTTCTGGGCTAGACAGAATCTGCTTTTATTAGTAAAGAACTTGTAAGTAGAGTCTGGATCATGTAGAATATGTCCTTTCACCCCACTCTTTCTTTCTTGGTTCTCACAG
Seq C2 exon
ACCAGCTCAGCTAGTGAGCAAGAAACACAAGCTCCGAAGCCAGAAGCGTCCCCGTCGATGTCTGTGGCTGCATCAGAGCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development