RnoINT0032648 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135762897-135766058:-
Coord C1 exon
chr6:135765979-135766058
Coord A exon
chr6:135762987-135765978
Coord C2 exon
chr6:135762897-135762986
Length
2992 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CCACCTTTTTCTTTTCACAGACT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATCCTATCTTTGAGTACTTCAACACTGCTCCTCTTGCACATGACCTGACTTTTAGA
Seq A exon
GTGAGTACCGTTTTTTGAAAATAAGTTTGAAATAGTAGAATGTAGGCCAGGTACGGCACACACCTTTAATCCCATCACTCAGGAGGCAGAGGCAATCAGGCCAGCCTGGTCTATAAAGCAAGTTCCAGGGCAAGCCAGGACTAAACAGAGAAACCCTGTCTCAAACCTGAAGGCCTGTCACTTGTTGTGAGTCGGGCCTGGTGACGTCATGGGCAGGGAAGTCACGTGTGTGAAGGTGGAGAACTCTGCAGATGTTGGAACTGAGCGAAGACTCCGAGGAACTGGGAGACATGGTTATTAAGTGACTCAGTACCAAGCAGTTTACCAAGACCTTACCTGGTCCCGCCTGTCAAGGTGACCAGTGTGTGACTGCTTGCCTGCTGAGATGCCTTTGTGCTGGGGACAGTGCTTTCCTCCCTTCACCCGTTCTGGGACTGCTTCCCTGACAGGGTGCACCCTTAGCTCAGGCTTGATCCCCAGGACTGAAGGGGGTGGGAGCTGGAAGAATGAAAATGTCTGTCATCAGCAGAGCTTCTGGTGAGGCACCTGCTGCTGGTGTCTAACTTGTTATTTCCTGTCGACCTGCCAGTGCCTCACTGGCGCACTTGACTTCTCTCAGCCTGTCCCCCGTCACCGACAGTTCCCTTTCCCTAACCTAGTTGATTATAGACACAGTGACCACAGGACACCTTGTGCACTTTCCCCCGAGACTCAGGCTCTTCTCAGTGGACTTCAGAGCCATCCTAAGGCTGGGCCAGCAGTGAATCTCAGCTCAGGGTGGACGGTCCCGCCTGTGTCCTGGACAACTGTCCCTCCCCGTTCAGGACGTGCCAGAGGTCACTGGTGGCCTTTAATCATCAGAGTCCCTCTAAGTAGCCTGTCTCTTCCCACTTAGGACAGTAGAATGCCCACACTCCGGGCTTATATCGTTCTCTGTGTATGTTGTGTGCGTGTCCTTGGTGGGAGGAAGGGCTGGCATCGGTCTGCACAGGAGACAGATTCTTTCTGTACAGAGTTCACTTTGCCGCTGCATTACTGGCTGAAGTGGCGTGGGCATGGCATCCCGCCTTTGTAAGCCGGTAGCAGTCACAGGTGACCACGTGGGTTTGGTGCAACACTTCCAGGGCACCAGGGGTCATTCAGGGCACTCAGCTGTTTACCTTCCCTCAACAGTGTTTCTCTGTAGCCCTGGGTGTCCTTAAACTGAGTCTGTAGACCAGGCTGGGCCAAGTCTCTGCTTTTTGTCCATTTGCTTGGCTCGGTTCGGTTTGGTTTTTTGAGGTAGTTTCTTTGTGTATCCCTGACTGTCCTGGAACTCACTCCATAGACCAGACTGGCCTCTAGTTCAGGGATCTGCCTGCCTGTGCTGGGATTAAAGGTGTGACCACCACACCCAGCAAGTCCTCAGTTCTTAAGCAAATACATTATAAAAGTAATTGCTCACCTTGGCCAAACCTTATCATGGGTAAGTGGGTTACACAGAGAGCTGGGTAGCTTTTGCGGTGCCATCTAGCAGTGTGGAAGTCACAGCATGGACCGAGGTTAACATGGAGGTTAACATTCATCTGCCTCCCTCATTCAATGTCCAGCATGTCTCCCGCTGTTAGACCCTCACCAATGCTTTTCACCTGGATTGGGGTCCATGTTAAAAGTTTCCAGACCTGGGGTTGGGGATTTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCTCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAGTTTCCAGAGCTGAGCCCTGGGAGCTCTTGAACTTTGCCAGATTAAACGTGTTGCTGATGCTAGAACTGGGTCTCCTTGGAGCCTCACTGGACTTTCTCGCCAGGGTTTACTGGGTGGGAAATGATCATTTATGTTCCTCCTGTCTGTTACACCAAGGACTCGCTCTCCTCCTCATCTGCATCTTCTCTGCTAGCCTTGTGGGAGGACGTAAGTGACGGCAGCTCCCCTTCCTTGGGCTGCTCAGAGACAGTGCCCTGTGTGCTCTGACTTCTGAGTCTGTGTCCTTTGATTAACAACTAAGGAAACGGCTTTTACGCCTCTAAAAATTACTTCATTGGCTTGCTCTTCCCTCACCAGCTGGATCGCTGACCTGTTTAACTTGCCTGTGGGTGGTACTCGTGTTTACTACCTTTGCTCACTATCTAATTAATGTCCCTGTCCTCGGAGGATTCGTTTACCAGCCCTAGCCTGCAGTACTCAGTTGTACCTGTGCTGTGTCCCCAGCCCTCCTCCCCTCGGAATGCTGGGTCTTCCTCAGGTCTGATCTGCAGCTGAGGTGCTCACCTGTACCACTAGATCAGGAGCAGAACACAGTTCAGCTGGGGATTCGTAGACTCTTCCGTACATTACCAAGGGATACCCACTGTGCCCATGTGGTGCTGTATCAGGGCTACACCCACAGAAAGGTTCACCCCAGACAGCAGCTAATCATGCGGTGCCTGTAAGTGCTGGGATTGTTAGAGGGAAACCCTGTGTTCATTGAAGTGCAAGCTCTAGCCGTCAGGGCTCTGTGGGTGTGATAGATCGACCGAGTTCTGTCGTCTGAGGACTGCCTGTGGCTGATTTTCCTAGTTCCTTTTTTTACAGATAGGTCTCTACTGTGTGGCCTTTGTTGGCTTTTAGAACTCACTGTTTAGTCTAGGCTGGCCTCAGACTCAAAGCACTGACTAAAGGCATGCGCTAACCTGCTTGCCCTAGTTCCTAGTTTATAATGGCTGGAGGAGAGAAGGCCCGTGTTGGGGTGGCCAGGCAACATATTCCTAGCAGTAATAGTGACTTGTCACTCCCCATAAAAGACAGAATACTTAAAAAAAAAAAAAAAAAAGACAGAATACTTGTGAGAAAACAGCTTCATGATGAGACCTGGGGGTAGGACACAGGGGACCCTAGACCCTGACAATACACTGTCCAGGAAAAAATGCCACCTTTTTCTTTTCACAG
Seq C2 exon
ACTAGCTCAGCTAGTGATCAGGAAACACAGGCTTCAAAGTTGGACTTGTCCCCATCAGTGTCTGTGGCCACAAGCACAGAACAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]