GgaINT0058986 @ galGal3
Intron Retention
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40352841-40354143:-
Coord C1 exon
chr5:40353913-40354143
Coord A exon
chr5:40352939-40353912
Coord C2 exon
chr5:40352841-40352938
Length
974 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATT
5' ss Score
6.62
3' ss Seq
GAGAGCACGGAAGCTTTGAGATA
3' ss Score
-18.25
Exon sequences
Seq C1 exon
GAGCGTTCAAGGAGATTTGCCCAGCAGGACACGGCTATACCTACTCCAGCTCTGACATCCGCCTTTCCATGAGGAAAGCAGAGGCAGAAGAGCTGCCCCTAAGCCTGGAAGAGCACAGTGAGAGCAGCAACTGGACGTTAGACTGGGCAGCAAGGAGACAGCGGCTGCAGGACAGTTTGCATGGGAGTGTCCTGGAGGCATTGCCCCACCCCGACATCTCAGCAGGAGAGG
Seq A exon
GTAATTAGAACTGCTCCACCTGGGTCTCTAGCAAGGGAGGGCAAACTCCCAGGTCCTGCTGCACCCTCTTGTGTGGACTCATAGCTGATGTGGGCTTTCTACCCTTGTGTAAATATGCAAGGTGTTGTTCCTCAGCCCTGAAGTATTCATGGGGCATGAGACACAACTTCTTCAAGACTTGCAGAGGAGGTTGAATGCTTCAGGCTCTTGTGACTGCAGCCTTGCAGTTGGTGCTGACTGGCCAGGCTGCCTGCCCTGGGACCTCAGGTGTGCGTGGGAGCCCTGGCACTGCAGTCCAGTACAGCTGGGGAGAAGCGTGACCAACTGCTTGTGCCAGAATCTGCTGGGGTGGGAGCTCCTGGGGTCTATGAAGTGCCAGGAGAGGAGTCCAGGGGTGTTGAATATGGTAACAAACGTGTGGGGAGAGTGAGGGACTACTGCAAGGCAGTGGTTTAGTGGTGGGATAAACTTTGAGCAGCTAGGGTATGATGGAGGTGCCTGCCCACCTTGTCTCTACTCACCACACACTGTTTCACTTTCCAGGTGAAGTTTTTCCTGCTGGGCAGGTGAGTAACCTTTGTCTTTCCACATCGAGGTAAATCTGTGGTAGCACCTTGGCTGAGTTGCTGTGGCTGTAGGCACTGTGCCAGTTACCTGCTCAGAGGCTGTTAGCTCACAGCAGCAGGAGCTGGGGACTCTGACCAGCGTTACCTCCAGTTCGCTGGGGCTGGGGTTGCAGCTCAGGCTGAGGAGTGAGGTGTAGACCCTCATTCCCCACTGCCAGACCTCGGTGGGCTTGGGACACTGCATCTCAGCTACGCACAGGTGCTTAGAGGCAGTCTTGTGTTTCTATCTCAGGATGCTGCTGATATCACCCCAGAGCCTGAGGCGCACAGAGGTAAATACCCGGCTGGTGGGAAGGCAGGGTGGGAGTGATGAAGAAGGGGCAGCGAGGAGAGCACGGAAGCTTTGAG
Seq C2 exon
ATACCTCCTCTGCATGGCATGGGCAGGGGTGGATGATGGAGGGCAGCAGGGATGCGGGGACGGTGCCTCTCCAGCGGGCCACGCTGGTTCTGCAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258:ENSGALT00000016690:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.303
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=6.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTCAAGGAGATTTGCCC
R:
CCTGCAGAACCAGCGTGG
Band lengths:
326-1300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]