MmuINT0093689 @ mm9
Intron Retention
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86149375-86150313:-
Coord C1 exon
chr12:86150098-86150313
Coord A exon
chr12:86149395-86150097
Coord C2 exon
chr12:86149375-86149394
Length
703 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
3' ss Seq
ATCTTGTCTTCTTTTCCCAGGTG
3' ss Score
10.87
Exon sequences
Seq C1 exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACACCTACTCGAGCTCAGACATCCGCCTGTCTATGAGGAAAGCCGAAGAAGAGGAACTGGCTAGCCCCTTAAGGGAGCAGACAGAGCAGAGCACTGCACCCCCACCTGGGCAAGCAGAGAGGCAACCACTCCGGGCAGCCACCGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
Seq A exon
GTCTCTGAGCTGGGGGAGACACCTCAGGTTCCTCTTTTTCTTACCAGGTCCTCGCCCTGGGTCTTAGGTTCAGAACTGTCCAACTCTGTTGCCTGAAGCTCAGGATGTGTGGGCTAGAAAGAGCTTGTATTTGAGGCCTCTGATCAGTGTTCCAGAAAACAACTGGGTCATGCCCAGGTCACCCAGGACAGGAGACCAAGAAGGAAGTAGGACCAAGAAAACTAGGAGATTGCCAAGAATCTGGGACTCAGCAGCTATGGGTGCGGGACACTAGTTCAGTCAGAGGCAATTCATTCCTTTCCTAGAACTTCTCTCTTAATCCACAGCTCAGGGCAGAGAGGATGGTGGGTAACCCACATGATCAAGGCCACAGGCGGGAGGAAGTCTGTTATGGGTCTGATGGGGATGGTGGGTGGGGAAATGGGGACTCCTGTCATTGGACACCTGGAAGGAATGCAGGAGGCTTCCTTTCTCCAACTGAGAGGAGAGCTGGGCTACCCATAAGGATCTCCGGCCTTGGGTTTCTGGGATGGTCAGTCCCAAAAGGGAGTTGACAGGCTGAGGCAGGTCAAAAGAGTTGCACTCTGGGTCTTGCTCATCTTGCTGGGGACGTAGCGAGGGGGGCAGACTGTGAAGCAGTCCCACATGGAGGGCAAAGGCCGCTGCCTCCCCTCCTGGAGCTCATCTTGTCTTCTTTTCCCAG
Seq C2 exon
GTGACTCTCGGGCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-Ltbp2:NM_013589:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=6.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTTCAGGGAGATCTGCC
R:
CTGAACAGCCCGAGAGTCAC
Band lengths:
236-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: