RnoINT0087532 @ rn6
Intron Retention
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108529288-108529898:-
Coord C1 exon
chr6:108529683-108529898
Coord A exon
chr6:108529308-108529682
Coord C2 exon
chr6:108529288-108529307
Length
375 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
ATCTTGTCTTCTTTTCCCAGGTG
3' ss Score
10.87
Exon sequences
Seq C1 exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACGCCTACTCAAGCTCAGACATCCGCCTGTCTATGAGGAAAGCTGAGGAAGAGGAACTGGCTAGCCCCGTAAGGGAACAGAGACAGCAGAGCAGTGGACCCCCACCTGGGGCAGCAGAAAGGCAGCCACTCCGGGCAGCCACTGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
Seq A exon
GTATCTGAGCTAGGGGAAACTCCTAAAGTTCTAAAGTTCTTCCTTTTCTTACCAGTTCCTTCCCTGGGAGGGGGGGGGGGTGTTAGGTTCAGAACGGTAACACCAACTCAGTTGCCTCGGGCTCAGGATGTGTGGGCTAGAAAGAGCTTGTATTTGAGGTCTCTAGCCAGTACTCCATAGAACAACAGGCCCATGCCCATGTCACCCCTGGGTTTCTGGTCAGTCCCAAAGGGGAGTTGACAAGCTGAGGCAGGTGAAGAGAGTTGCTCATCTTGCTGGGGATGCAGGGAAGAGGACAGACTGTGAAGCAGTCCTATGTGGAGGGCAGAGGCTGCTGCCCCCCCTCCTGGAGCTCATCTTGTCTTCTTTTCCCAG
Seq C2 exon
GTGACTCTCGGGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094:ENSRNOT00000031331:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=6.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTTCAGGGAGATCTGCC
R:
CTGAATAGCCCGAGAGTCAC
Band lengths:
236-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]