BtaINT0087877 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86214588-86215838:-
Coord C1 exon
chr10:86215623-86215838
Coord A exon
chr10:86214608-86215622
Coord C2 exon
chr10:86214588-86214607
Length
1015 bp
Sequences
Splice sites
5' ss Seq
AGGGTATCT
5' ss Score
3.45
3' ss Seq
CTCTCCCCTTTCCTCCCCAGGCG
3' ss Score
12.4
Exon sequences
Seq C1 exon
AGGCCTTCAGGGAGATCTGCCCTGCGGGCCACGGCTACACCTACTCGAGCTCAGACATCCGCCTGTCCATGAGGAAAGCTGAGGAGGAGGAACTGGCCCGGCCCTCAAGGGACCGCGGCCCGAAGCGCAACGGGACCCTGCCCAGGCCAGCAGAGAGGCAGCCACTGCGGGCGGCCACCGGCACCTGGGTGGAGGCCGAGACCATCCCCGACAAGG
Seq A exon
GTATCTGGTTTGGGGAGGAGGTCTGAGGGCTTCCCCACCCGCTCAGGTTACAGCACCTCAGAGAGAAGTGGGGTGTTTACCCTGGGCCCATGGCGTCCCACCTCAGGGGCGTTAGGAAAGGGATTTGGAAACGCAGCTTGGCCTTGGGAACCTGCTCTCATGGCCTGGCCTGATGGAAAGGCCACGCCTCCTCCTTTGGGGTCAAAAGGTGCCCATGTCCCAGAGAGCTGCTGGTGGGGGCTCCATAGCACCACCCCCCAACCACTGCTGACCCTGCCTTTCCATCCCCTGCCCCTGCCGCACCGCTTCTGGGGCTGGTGCTGGCATCCTAGGGAATCTAGGGGCTTCAGATCCCCTCCCATGGCCTTAGAGTCAGAGCACTGGCTCCAGGTCAACTGCCTTGGGCCCAGGAGGCATGGGGCTGGAAAGATACGGGGCTTGAGGCAGCCCTGGCAGGTGCCCTGGGAAACCATGCAGAAGGCACACCTGGGCTACTGGTAGCATGGAGTCCAAGGGCGCGTTAGAACAGGGAGGACTGTGCGATGAACAAAGTGCTCTGCGAACCAGGAGCAGGCCGACAGGGCAGTCAGGCAGAGCCCGTCACCGTGGTAACTGGGCGCTGGCCAGGAGCAATCCCCGCTTCCCAGAACTGTTGCCTTGCCCTGGAGCCTGGAGCAACCCTGCGTGGCCGGGAGGCTTGCAGTGAGGACCAAAAGTGTGGACTGGCCCAGAGCAGCTGGGACTCCTGTCGCCAGGGGCATTCAAGGAAAGCCAGAGGTGTCCTCTCGCCAACTGACCACCTTGTAGGCCCCCAGCCCGGGGATCCTGGGATCTGGGCTGGCCAGTCCTGGAAGGGTGGCAGGGGCAGGTAAACTAGTCAGAGCTGTCTCTGCCACCGGGCCTGCTGTGGACAAAGTAGGGAGGTCACAGAGTGAACCAGCCCTGGCCGTGGGGGGCGGGAGCAGGCAGCCGTACGTGTCCTCCCTGAGCTCACGCTCTCCCCTTTCCTCCCCAG
Seq C2 exon
GCGACTCTCAGGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957:ENSBTAT00000029274:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=6.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGGGAGATCTGCCCTG
R:
CTGGCTGGCCTGAGAGTCG
Band lengths:
233-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development