GgaINT0059915 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12867844-12870566:-
Coord C1 exon
chr5:12870503-12870566
Coord A exon
chr5:12867988-12870502
Coord C2 exon
chr5:12867844-12867987
Length
2515 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTTCTTGCATTTCTTATTAGAAC
3' ss Score
7.35
Exon sequences
Seq C1 exon
ATCTTCTATTGAAGAGCTTCTTGATATCTATCATAAGCAAATTGAAATAGCTCTGAAAAATGAG
Seq A exon
GTAAGGTCATTGCAAATTATTGCTGAACCAAAAGTAGCATGAGAATGTTTACTGATAAGACAGTTGGAGGAAAAAAAAATTGCAGGTTTTCTTGGAGAAACTAAAATCTGAACAAGACGCCAAATGTGAATTTGGTATAATTGGTTTTTAGATTGCTTTTCACACTTTTCTTTCTGGCTTTTTCTGTGATCTGCTGATTACCTAATCATTGCAAGTAGCAATGTGTCCTCCAAGTCCTAAGGTGCAAAATAACCTTTTCCTCAAAAATACTGGAAGAGGTTACTTTAGGGGAAAAGGTCTGTATCTTGACTATGTCAGTTGTTGTTATTCATGATACATTGCCAACAGATCAAAGTCTGTACAATTAAGCAGTAACGTGTATAGTGGAAGTTGCATTCTTGGAACACAGAAGTTAGTTTTATGCAAAGCATAATAACATCTTACTCTACACTACAGGATTAATTTAAAAATCACAGTGGTTATTTCACTCTACCATAGCTAACTTGAAACAGCTTTATGTGAAATGAAGCGATTTCCCAAATGCAGAAGTCTAGCTGAAGATAACCTACTTTGCTCTTTTCTAAAAGGACGAGTGTCCTGGTTTCCACTGAAACAGTGTTAATAGCACACTGATGCTCTGAGTGATGGGAGTGTGATGCTGAGCTGCATGCCAGGTTAAACCACAACAACCGGCTTAGGTTAACTCTTGATAGTAATTAACCTGGAGACTGAAACCTTGAACAGCTTCTTTAAGAAGTATGTTTCTTAAAGTTTCTATTAGGAGCAGTCTTGAAATGGAAGACTTGGTGAAAATGAAAAGTATTACAATTAAGTCTGTTTTATTAACTTTGTAGGAATGCAGGTCTCAACAAGCTGCTCTCCACTATTTACATATTTCCATAATACCATTAGTTCATAGGATTTTTCAATTCTCTTGATGTTTCACTGTGTTCTCAAGGGTAGTTTCAAACGCAATCTTATTAGAGAAGAGTGAGATATTAAGTGCTTAATAATATGATGTTTTTGTTGCTTTGCTCTTGCAGCTGCCTCAGATTGCTTATTTAACTGTGATTTCACATGTTGAGGTGAGGAATATAAAACACTGTGGTTCAGACTTATGTTCTGCTCTGTCCACAGAGTCTTTTTGAAGATGAGAGATGCATTTTGTAGGTGACAACTAAGTCCAAATATCAACAGTTACTGCGTTTAATTTTTTTCCTTCCTGAAGTGACTTTCAGTACATATTCAGTAGCTGAAGTTTGTTAATCAAAGTGAAGCAGGGTGAGGTCATCAGTAAATATGTCGTATGTAGCCTTTGAATTTGCATCTGTGGACACATTCAAATATAAGCTAGTGTCCTTGTAATAATTTGAGAGCTGATAAGAACAATAGCAGTGGACATTTTGCTTTTCATATGCCAAACAGCTGTTGTCTTCAAGTTGTTAGCTTGGAAAGCAGGCTTAAACATTTACAGTGTCTTCCAATTTCTAGGGTTATTTTCTTACCAGTGCAAAGTTAATTGTTGCCAGGTAATTCCCAATCCAAAAACTTTATTATTCAAACGGCTGCTTTGTTGTCCATTTGCATGAAGGTCATGTGAGAGTGTGTACGTGTGAAGGGAATCAGTTTATATCTTAGCAAGAGAATATTACACCAATTCCTGCTATTCTAAGTGATCATAAGTGATGGTGAACAGAACCTATACTTTAAGCCTTCAAAAAGTAAAAAGAGACGTTATTTTGAAGCAAATATTTTCATTTTCTGTCTGTATTTTAGATGAAGACTGCTAATATTAAAAGAAAAGCTAGAATTCTTTGGATTTAAATGGAAGGGTTTTCTTTTTTTTTCCCCCAATCTGAAGAGAATACTGAGAGGTTCTGTTTAAGTGTACAATCTCCCTTTTCACCCCCAGGATGGCAGTTTGCAATTGTTTGATCTCTAAGAACCATTTAGGTTGAATAGTATGCAAAGCAAACAGTTGCAAGGAATGTTTTTCAAACAGTAGGTTCAAGTGAAATCAAACAGATAAATACGTTCTGTTACAGAAGCTATAAGGTAGTGTAAATGTAGTTTGAATCTTTGTGTTTAAAAGAGCTGGAATTGCAAAGCTTTTTCTTTACTTTGATTCTTACACTCCTTGAATATCCTTCTTAAAATCTACTTTAAAAAAAAAATGACATGGGAATTTGAGCTTAATATCTCATTAGACAATATCTGCCTTGAGCTAAAGGAAAAATTGTTGGAAACCTCTTAGTATTTCTTGGGACACCATGCTGCACTCTGTACTAGTCCTGTTTGTACAGCATTGCTAACTGAGCTATAAGGAAGTTTTCAGTATGGTGGCTTTTTGTTTAATCATGTTGTTAAACTACAGGTAAATGTAATTGAGATATGCATCCCATAATAAAATCTTCTGGGCAATTCTTTCTTAAAAATAATAATAATAATAATAAAGCAACATTGTGTTTTGCAGTAGTGACCATCTCAATCTGTTCTTTCTTGCATTTCTTATTAG
Seq C2 exon
AACCAACATAAAGCAGTGGATCACTTGATTAAGACTGTCAGAAAAATCTGTTCAACATTGGATGGTGTAGAAACTCCTGCAATAACAGAATCTGTAAAGAAGCTGCGGAGGGCTGTTAATCTTCCAAGGATTAAAGACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]