DreINT0114214 @ danRer10
Intron Retention
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27053026-27055893:+
Coord C1 exon
chr18:27053026-27053089
Coord A exon
chr18:27053090-27055746
Coord C2 exon
chr18:27055747-27055893
Length
2657 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
3' ss Seq
TTTTCTGTGTCTCTTTTTAGAAC
3' ss Score
12.96
Exon sequences
Seq C1 exon
AGAAGGCCTTGCTGAATATCTAGAAGGCTTTCATAAGCAAGTCAATCTCTGCCTTCAGAATGAG
Seq A exon
GTAGCACATTTCTGAAATGTTTCAAACACTAGCTTTGTTTGCAAATAAAGATTTAAATGACATTTATGCACAAATATGGAACATAGCAAAAAACGTTTGCGAATAAAGCAAAGTTTACATTCAATGAGTCAAAGAGAGCAAAATTGTCACTTCCTGAAGAATTGGTGCCAAATATCAAAAAGAGAAATGAAATTTGCTACAGTAGGAGAATCCACTTTGAGCCTGTTTTTCCTCATATAATAAATTAAACCTCAGAGAACGAAATGCAATGAATGTTCAGTGTATTTTGGAGGCGCAAGACTGCTTTATGGGAGCGCAGCCACCAGAGCAGAGTTTTAGATGTAATAATGCCAAACCAAGGTTATTATAGTGAACGAAAAAACGACAACTAAAAAACTGAAAGAAGTTTTTATTTTTTTATTTTATGTTTTATAATTAGAACTGAAACTGTATTGTGTGCATACAAAGCTAACTAAAAGTATTGCATAATTTTTTCTTTGTTTTCGTCTTTTTAAATGTATTTAATACATACTTCGAGCTGTTAGGTGTTTGGTCCACAATGCACCTCTGAGTCTGTAATCCTGATGCCATTGGCCAGATCAAGCTGGTTCTTCTCCACTCAGTCCTTACTTTTGCTCCCATGACAAAAAAAGAATGGATATGACAGCAGCATGGTGACAGCAGTAAATGCAGACTTAAAATTATTAATTTTTACCACATTTGTTCCCATATATAGGTTTTATTTCTGTATAAGTGAGTGCAATCTCAAATCTTTAATGCAAACTGGATCTTTTGTGAGTGTGAGTGCAACTTCACTTCCTAATCTGCAATTGCCTCTCTGGATATACCACTAACTGTACTCAAAAAAATAAAATTTACTAATACTTTCCTTCTTAGACTTTACAGACCTGAAACTTGCCTATAGCACTTATTCATTGTTGCTCTTATAGTTGTGTAAATTGCTTCCTTGTCCTCATTTGTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAATGTAAATCCAATCTCAATCACAAACGAATCATTCTTTTTAACCAGATCTTCTAAGTAAACCAGTTAAACTAGTTCAACAAATCGAAGTAAATCATTCTGACTCGAAACAAACCAAGATATACTGAGTTAATCAGTTATTTGTACAGTGCACAGAGATCAGATTTGATAATAGAACCGATAATACTGCGCATATGTATATAACGGTACATGACAGCCTGTTGTGACTCAACTTAACTTGAACAACTGCAGCGCTGGTAAACTGTGGGCTTATATGAAAGGATCTGGCAAAATGTAAGTTTATTTCATGGCAGAAAATCGTAATGGAATTTAAATAAGTGAGTCATGCTTGAGTTAGGTTGCAAAAATAATTGTAAGAAACTTTTCAGATCATAATGATGTTTTAACTGACGTAAATATAATTGCTGACTACATATTTTTGATATGTTAAGTCCTAACATGGGAGGATGGTCACGAAAGATCCAGTTTGTATTAAAGATCTGAATTTCCCATTACTACGTAACTAACATCAGAAGCAGCCTTGCACACATATTGCACTTTGAGCTGCTATATTGTGGGCTGTTGTATTTGATTTTTAAGATGGGTAGATGATAGTGGTCATGTGTCCTCTGGATACATGTTTCAAAAGATGTATCTTTGGTTGAGTTTTTTTTTTTTTCATTTTGAATCTTGTATCTAACAAATATCCTTAATAATGATAATTAACAATTATAATAATATTTGAAACTAATATGAACTAAAACTAAGCAGTTTTAAAAAATATATATATATTTATATATATAAACTAGTAAATCTACCTCTAAATCTATTTAAAACTAACTGAATTTGAAAACAAAAAGTCAAAATGAAATAAAAACTTAAACTAATGAAAAGTACAAAACTATTATAACCTTGTACCAAACAACTTATTGATGATGGACATTGGCTGAAGCATTTTAGATTAACTAAAACAAAAATTCAGATTTTTTACAATGTGCCACTGTAGGTTCACTAGTTTGTCTGTTAAGGCTATCTCCTTACACCTTTTTTATTATCACATGATCTGTTGAAACAAAATCATGTTGTGTTTTTGCACATGCTGAAATTATTTCAGTAAATGTCTTTCCATCGTAGTTTATGCACATTTCTTGTTTGATAAAACATTCTTTGTTGTGAAGGTTTTAATGCACATTTTCTAAAATTTAATTTCTATATAAAACATTTTTTATTCAGTTCAGTTCAGGTAATCTTTATTTCTTTCACACTTTTTACAATGTAGATTGTGTTAAATTAGCTTAACTTGGATAAAGAAAAGATAAAGAGTAAAATAATATTTTTTTAAATTGATTTGTGGAACATTCCAGCAGTTCAGGCAGGCAGGAGAGTAGTGTAGAATGTGAGTGTATTTCTAATAAATTGCTTCTATTCACTTTAATTCTGATCGGTTTAATGCAAAAGTTAATGCTGAAGGAAGATTTACCGAAGAGCAACTCCACAGATGCGATATTCCAAACTTCACATAAAAATAGCTAGATGAAAACATACAGTAGCTACTGTATCAAAATAAGTCAAGAACTCCTTGAAACTATTGTTATATATTTTTAATTGTAAGCATTTTTCTGTGTCTCTTTTTAG
Seq C2 exon
AACAACCAATATAAAACAGTGGACAATGTGGTTCAGTCTGTTAAGAATCTGTGCTGTGCTCTGGATGAAGTTGAGACACCAGCCATCACTGATGCCGTCAAGAGGCTCAAGCGCTCTGTCAACCTTCCTAGAACACGCTCACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841:ENSDART00000133547:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]