GgaINT0060212 @ galGal3
Intron Retention
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28309544-28313346:+
Coord C1 exon
chr5:28309544-28309610
Coord A exon
chr5:28309611-28313203
Coord C2 exon
chr5:28313204-28313346
Length
3593 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
GTGACTTATCTTTTCTGCAGGCG
3' ss Score
9.63
Exon sequences
Seq C1 exon
ACAGTTCAGAGGTTACCCCTCCTGTTCTTTCTGTGGTGGGAGAAGCCACCCCGGTCAGCATAGAACC
Seq A exon
GTAAGTACCCAGCAGAGTCTTAGCCTGGTAGTAAACCTGCTTCTCTTCCCACTCCTAAACCTTCGACCTGCTCCATGTATAGTTGATATATCCTCTTGGAATAGCTTTAATGTTTCTTATTAGTGACTCAACATATAAATGGTCTCTTAAAAAAAACAACTCTCTGCAATAAATGGCATTTGGGCAAATGCACTTTTTAATTCTGGTGGTTTTAGCTACTTTTTTATTACTATGGAGCTGTCTCTGGGCTGAAATAGCATTGGTTAACTGAGTGAGTTAGGTGAGTCTCTTGTTTTGTTATGTATACGTATTTGGAAGCTCTATAATTGTTTGAGAGTGGGAAAATAATGCTCCTTTAGTGAAAGACCAAAGAAGAATAAGGACAAATGTAGTTAGATTTCAGATGGGCTGCTCATATTTCAGGTTATCCATGTGGCACATACTACCTTCAGCACAAATGTGAACATGGTTTTGTTCCCTCTTAGGCCATCTCAGTCTAAAAGCATGGTATCCACATGCTTGCAGTGTGGCCTGAACTAATAAGCTTAATTAATCTTTTTAGCTGTTTGTGTGCTGGGAAAGCACACAACATTAAAACCCAGTGGCACTAGGGAACACAGTTTGGAAATACTGAAACTGGAGTTACAATTTTAGGCTTGGTGCCAGTCCTGCTAAACGTGTCAGGAAAAGCAGAGCTGCAAGTGTCTCTGTATAGCCCTTGTAAACTGTGGGAACGTTATCAGTTGGAATTAAGGCCTGTAGAACTGTGAGGTAGTTCCAGTTCTGTTTGAACTTTTGCAAAATCTAAGCATAAAGATGTATGGTATGGGGATAGCCATGTGACGTAACATTCATGTGACCCTGTATTTCTGACTCCCTGCAGTCAGGAATCTCTGCTCTAACTGCAGCATATCTTGTTAATGTTTGAAATTTAATTTAGACCATCTCCAAATAAATATGTTGTCTTTTACTTCCAAAATTGTCCATGTTTTAAAGATTAGCTATAGCATTTGCTGTCAACTTACAGGACTTCTCCACCTTTCTCTGTCCTGCCTGTTGGAAGTTCAGGTTTTGTATGTTCTTGGCAGCAGGCTGTCCTGAGCTGATTTGAAACCTATTGCGATTGCAAATAAACTCAGGTTATTCTTGTCACCTTCGCAAACTCCCTGTGGGCCCAGACTCTGGCTCCAGGACAACTCAAGCAGATAACCACAATTTTTTTGCTCCTGTATCTTGTATTGCACCAACAGCAGTTTAAACTCATTCATAGAAATAAACAAGCACAGATTTCGTTTTGGTTTGTTTTTAATCTGTTTTGACAGCAGCTTAATTCATCATTTTGTTGTTGGTTGAAGTGAACCTCCTCTTGAACAGATATTTTTGTTTTTTCAGCAGATCTTGATCATCTTTGCATGATGTTACTAAGTTTTGCTGTTGCCTCCACTGGTTTAAATTGCTGAAGTTAATGGCGTAATATTGGCTGCGGGTTCAGTTGTGGATGAAATTTTTCAAATTTGTTACTATAAAATTCAAGCCATGATGACTTTTAACTCCCTTTTTTCAAAAGGGAACATGCATTAGTGTGCAAAGAGCTATCTTGTCATCTTAAGACTTAGTGAACAGATGTTTAGGCAGATTAGAAAACTTTACACTTTAAAATCAGAAAGTAGTGTCATTTTGTGTTGTCAAAGTAATTAGCTTACTACTTCAATGCTAATTTGTGCAGTAGTGTTGTGGTCTGTTATGTGGATGTATCTTCTGTAAGTGATGGCAGGAAACATTTTTTTTAATTATTTTTTGTTTTTAAGAAAAAAAAGGAAAGTACAATTTGATCCATTGTTTGCATTCTTGATTCTGTTAGAAGCTGATTATAACTTATGATTGCCACATATTGTGTTTTTAATTGCTTGCTTTGTCAGACCTTCTGCTAATGCTTCTTAAAAGGTTATTTGATTGCAAAGATTTGTAATACGAAATGTGCTAATGAAGCTTAATTCTTCTATTTGTGAAGTAGATTAATAGGCAGCTGGTGTCACGCATCTGAGCGTCTTAGAAGTCTTGTAGTTCAGTTCCTTTCAAGTCTTCCTCGTAGTCACTCCTCAGCTAGCCTCAATTCTGAATTATGCCACATGTAATTGTATCACAGAGTACCCCAGCAGCACTGATGATAGGCAATAGCTTTTGCTATACTGAAATCTAGGATTCCACGTTAAAGGAGTCATGGAATAACTTAACTGCAGTGGACCTTGGGAAGTCACTTGGTCCAAGCCCCTACTTGGAGCAGGCCACATTAGATCAGATTACCCATGTAACTGATGAGTTTTTGTGGTGGAAATCTGGTTTTATTTGGATATTGCAGGTGCAATACTCATAGGCTCTTACTGTCTCAGGACACAATAGCCTATGTTTAGTTTTAGGATAAAGGGTCATTTCTGAGATATCCCTCCTAGCTCACATTCTTTTCCTCAGGTTCTTCCAGCTACTACTCTCCCTCTCACAAATGAGGCCAGAAGAGTCACTGTCTGGGGACACAATCTCCCAAATTTTCCTAAGTATTAACAGACTTCTTATCTGTTTCCACTTGACAGCAAAGTCAGTTGCTTGTAGTTATCCCTTCTAGGGTGGGTCATTAATCACAGCCCTTTCCTCCACTGTAAAACTGCATGCCATACCAATAGGTGACACTAATTGCCGTGAGCAGAATATTCCACACTAATATCATTTTGCAGTCCATCACAGTATGCTGAAATGAGGATGTATCAAGGTTTTTTATTTTGTTTGTTTTTCTTTTAGCAAGATTTTCTCAGTCTTGTATGAAATCTTCTTGTTTTTTGTTCTGCTCTCATGCTGTATCTCCCTGATAAGATAATCAGTCAATGTCATGTTTTTTCTCTTCAACAAAATAATCAAGAATGGTGAAGATAGATATTCAGGAATGGTGAATAAGTAGAAAACTATAGGTTTAATTGAGTTCTGTACCTGTAAAATACTCAAAACCGAACTGAGTTTTTCCTAGGGTTCTTCATTCTCCATGCAGCTTCCACTCTCAGTATATATGAAATTGAATTACTTTTCAGAAGCAGTATCTATTGTGTTATCAGTTTTCTAGACACCCTGAAACACTTAAAACTGTGGGCATTACAGGTGGGACATTTTCAGCTGCCTTTGTTATCCCCATGCCATGCCACTAGACAACATTCCTAGCACTTCACTTTTGACTGGAACTGGAGATCATGTTTTGAGGAAAATGACAGGCAGTATATAGTGTTCTGTATAAAACTCCTCTGTTACATTAGTTATACCTGGATGTTATCTCACTATCACCTACTGCCAAGGAAGTTTTCTGAGCAGTTATTAGGAGATCCTACTTTAAGTACAATTCCAACCACTGTTGATCGGTAAGACAATGGAAACTGATAGTGAGCATAAGACCTCTTACCTTTTCAGTTGTAATGTACAATACCTGAAAGCTATTCTTGCTATACGGCAGAGCTTGCTGCATTTCGGTTTCTCCATAATTTGCATTTTTACAAGAGATGCGGACTGTTTGGGTATTGCAGAAATTGCCTGACCGTGACTTATCTTTTCTGCAG
Seq C2 exon
GCGTATAAATGTAGGAACTCGCTTTCAGGCAGAAATCCCTTCACTCCAAGACAGATCTCTGGCAGCAGCTGATGAACATAAAGCAGAGCTTGTGTGGCAGCCATGGGGTGACCTGGAAACCAACAGAGTCACCCAACAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282:ENSGALT00000015102:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0144819=ELM2=PU(76.7=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]