RnoINT0054398 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107643736-107644419:-
Coord C1 exon
chr6:107644353-107644419
Coord A exon
chr6:107643879-107644352
Coord C2 exon
chr6:107643736-107643878
Length
474 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
CTGCCCTTCCGCCCCTGCAGACG
3' ss Score
10.87
Exon sequences
Seq C1 exon
ATAGTTCTGAAGTCACCCCGCCCGTCCTCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACC
Seq A exon
GTAAGTGCAGCCCTGCCCCAGGCCCATGGTGTGCATGTGGGTGCCCAGGTGGGCCTAATGCATTGCAGATTGGCTTTGGAGCAAAGGGAGGGTTCTGTGGGGGCCGTCATAGGGCCAGTCGGTCTCTCTGGACTTCTGTAGTCTGTCCTGGGCTCTCTTGTTTGTGCCAGCTTTTGTGTGGAAGTTGCAGAGAGGAGAGGGAAGGACCAAGTTGGCTTGGGTTTGTCAGGAGGGAGAGCTGGGTGGGAGGGCCCAAGAGTCTCTCCTTATCTGTCGAATGTGGAGCCTTGTCTTTCTGGTCTTGCCCCCAGCCAGGCTGTCTGTCTCCCAGAAGCCACATTCCCGACACCCAGCTATGGCTTTACTGCATTCCGCATGTGCCAGCTGCACCGTTTTCTTCCCATCCTAGGGAGAAAGTCAGGTTCTTAGTCCCCACAAAGTGAAGCCTCACTCCCTGCCCTTCCGCCCCTGCAG
Seq C2 exon
ACGAATCAACGTCGGCACCCGGTTCCAAGCAGAAATCCCCACAATGAGAGACAGATCCCTGGCAGCCGCAGACCCCCATAAGGCTGACTTGGTGTGGCAGCCTTGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0144819=ELM2=PU(79.3=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTCTGAAGTCACCCCGCC
R:
CTTGCCTCTGCTTCTCCCAG
Band lengths:
209-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]