HsaINT0020749 @ hg19
Intron Retention
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74193533-74194227:-
Coord C1 exon
chr14:74194161-74194227
Coord A exon
chr14:74193676-74194160
Coord C2 exon
chr14:74193533-74193675
Length
485 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TGCCCTTTTCACTCCTCTAGACG
3' ss Score
10.15
Exon sequences
Seq C1 exon
ACAGTGCTGAAGTAACCCCGCCTGTCCTCTCTGTGATGGGGGAGGCCACCCCAGTGAGCATCGAGCC
Seq A exon
GTAAGTGCAGCCCTGCCCCTGGCCGAGGGGTGTGGGTGGCCACACTGGTGCAGTGTGTGCAGGTGGGCCCTGGGAGCAACAGGAGGGTTCCGTGGGGCCTGCAGAGGGCTGAGAGGGCCTCCTTGAGCTTCTGTATGTGGCCCTGGGCTTTGCTGTCCCCGCCCTGCCTCTGTGTGGAAGTTGCAGGGAAGGGCAAGGACCGGCTCAGCTTGAACTTATCTCTAGGAGAGTTGAAAGGGGGGTCCAGAGGCTCTTTCCCATCTGTAAACCTGCAGCTGCTTCTCCCCTCTCCAGCCTCTGGACCTTGCCTTTCTGGTGGTGCCAGGTCAGGCTGTCCTCCCAAGCCCCTAGAAGCCAGACTCCCTACACCTAGCTGAGGCCTTGCTCTGCCGGCTCCCCCTCATCTTCTTCCCACCCTGAGGGATCATCAAGTTCTCCGTCCCCGCAAGGTGAGGCCTCACTTCCTGCCCTTTTCACTCCTCTAG
Seq C2 exon
ACGGATCAACGTGGGCTCCCGGTTCCAGGCAGAAATCCCCTTGATGAGGGACCGTGCCCTGGCAGCTGCAGATCCCCACAAGGCTGACTTGGTGTGGCAGCCATGGGAGGACCTAGAGAGCAGCCGGGAGAAGCAGAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030-C14orf43:NM_001043318:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0144819=ELM2=PU(79.3=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTGAAGTAACCCCGC
R:
CTTGCCTCTGCTTCTCCCG
Band lengths:
209-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)