GgaINT0060907 @ galGal3
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55272554-55278175:+
Coord C1 exon
chrZ:55272554-55272696
Coord A exon
chrZ:55272697-55277962
Coord C2 exon
chrZ:55277963-55278175
Length
5266 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CTCCTTTGTTTTTCTCACAGCTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
ACACAGGGCATGGTCTGTGGTCAGCCTTGTCCTGAAGGTCGTTATGGGAATAACTGTTCCCAGGAGTGTCAGTGCCACAATGGAGGGATCTGCGACTCAGCGACAGGTCAATGCCATTGCAGCCCAGGCTATACAGGAGAACG
Seq A exon
GTAAGAAAAAAATCATTTTTGCCAGACTCCCGAACCTGCAAGGGATCTGCTACAACAGAGAAAGTAGAGAAGTGGTAGAAAGACAAATGAAAATGCCCGTTATATGAATAAAAGTTTTGTGGAAACTTATCTGATACTGAATCTCAAGTTTAAAATGATTACTTTTATGTAAAGAGTTGCTTGGTTTCAGGATTTTTATGCTGTGGCCCACACTCTGCCAGTGTCCTGTGGGTCTTCATTGGAGTGCTGTGCAGAATGATATAGACAGTAGAAAGTATTCCATTCAAATAAGGAAATGAAACTTTCGTATTTTCTAATTTGTTGTTAAAAAATCTTCTTCGGTGGATTTCAGAGGAAAGAAAATGGCAATTTTTGAGGCAGGGTAAAGCGGTGAAAGAAATGCTTTCCTGCGTATATTTTAAACAGCACACAACTCGTGCTGAAGTCAGCAGTGGCTTAATCACTGTGGTCAGTCCAGGGGATCTCCGCCAACAATAGTATTATAACCATATGCTCTTCCCACATGAGCTTCACAGGACATAGAGAAAGCTGTGTCAGGCATAAGTGAAAAAAAATCTGAAGAAGAGACACAATTAGTTCAGTGCCATTTGCCTGCAAAAGTTGAGGACTGCTCCAGAAGAAATGCCTCCTATTTTATTATGTTGGACTGTAGTGTCAGAGGTAGATGTTGGTGGTATGGCATGCTAAGGAACATTTGAGATGAGAAGGTGATCAGAGACAACCAGCATGGCTTCATGAAAGGAAGGTCGTGCCAGACCAATCTGATGGCCTTCTGTGATTGAGTGACAGCATCAGTGGACAAAGTGAAAGCAACTGATGTCATCTACCTGGATTTCTGCAAAGCCTTTGACATGGTCCTCTCCCACATTCTACATTCTTTTCTATAAATTGGAGAGATACAGATTAGAAGGGTAGACTATTCAGTGGATAAGGAATTGGTTGGATAGTCACAGCCAGAGTGTTGTGATCTACAGATATATGTGCAAGTGGAGGCCAGTGATGAATGATGTCCCCCAGGCATTTGACTTGGGACCGGTACTCTTTAACATCTTGATCAGTGACATAGATGATGGACTTGAGGGCAAGATTACTGATGAGACCAAGATGGGTGGTGTAGTTGATATGGCAGAAGGAAGAGATGCCCATCCAGAGAGACCTTGATAAACTGGAGAGCTGGGCCTGTTTGAACCTAATGAGGTTCAATAAAGCAAAGTGCAAGGTTTTGCGCTTGGTTTGGGGTAATCCCAGATATGTATACAGACAAGGAGAAGAACTTCATAAGAGTTGCCCTGCTGAGAAGGACTTACGGGTCCTGGTAGATGAAGAACTTAACATGAGCCAGCAGTGTGTGCTTGCAGCCCAGAAAGCCAACTGTATCCTGGGCTGCACAGAAGAGGGGTGCAGTAGGGCAAAGGAGGTGATTATCCCCCTCCACTCTGCCCTGGTGAGACCCCAGCTGGAGTACTGTGTCTGTGTCTGGGGCTCCCAATGCAAGAAAGATGTCATGCTTTTGGAGAGGGTATGGAGGAGGGCTACAAAGGTGATCCAAGGGCTGGAGCTCCTATACAGATGCTGGGATGGTTCAGTTTGGAGAAGAGAAGGCTACAGGCAAACCTCATTATGGCCTTCCGGTATTTAAAGAGAGATTATAAACGTGAGAGAAATTAACTTTTTACATGGGTAGACAGTGTTAGGACAAGGGGGAGTGGATTTAAACTAAAGGGTGGAAGATTTAGATGTAAGGGGGAAAATTTCCACTGAGCGGGTGGTAAGGTGCTCGAACAGGTTGCCCAGAAAAGTGGATGTCCTGTCCCTGGAGGTGTTCAAGGCCAAGTTGGATGTGGCCCTGGTCAGCCAGATCTAATACTTAATCTAGTGGCTGGCAAGCCTCCCTGTGGCGTGGGAGTTGGAGCATGATGATCCTTGGGGTTCCTTCCAATTCAAACCATTCTATGATTCTATGAAAGCTTGTGCCAGGTGGGGTCCCATGAATGTTCACACAGGAACAGAAAGAATATCATACACAAGCTTGTCAGGATCTATTGAACCAATACAAGGCTGAAGGTGACGGCTTCCTGGATCACATCCCTACCAGTGACAAGATGTGGTGTCACCACTATGAGCTGGAGTCAAAATGACAATCCATGGAGTGGAAAGGTGAATTCCCTATCAAAGAAAATGTTTAAGACACATCCCTCAGCAGGTAAATGGATCCTTCCCTGTTTCCTGGAACCCAGACAAACCACTGCAATACTGTCTAAGCTGAAGGCTCAAACTTCAGAGGCAGGACAGACTAGAAGACAACCTTTCTCTTGCAACACAGTAACTCTAGGCCCCATATCAGTTTGAAGACAGTGGAGCCCACTGCCAATCTTGTCTGGACTACCCAACCATGCCCACCATGCCCACCAAATTTTGCACCTTCTGACTTTCTTCTGTTTGGACTGATGAAAGATGCACTGTGTGGGCAATATTTTCCTAGCAACAGTGCTGTCATAGCAGCTGTGAAACAGTGGGTCACCTCTGCTGATGCAAATTTTGGTATGCATTCTCTTAGTTCATTACTGGCAAAAATGTGTAACTAATGGTGTTGACTGTGTTGAAAAAGAGTTTTCTGTAGCTGAGAATTTGCTCTATCAATTGGCATTATTTTACCCCTTGAATCTGTTGTAGATTCCATTGGGATAAATAGGAAGCATTACTTTTGGAGTGACCTATGCAAATTTGCCTCTGAGGAAATAGTGCAGTAATTGGTAGATGCATTTAAAGAGACGCATTTCAGCAGGGAAATCAATAGAGTATTCATGTGAGAATCCACGTATCACTCTCTGGTCTTTCTTAAAGCAAATTTTTTTGTCTTGGAATATAAATCTGACTGTAGTCTGAAATTCCTTGCAGTATTTTGATTCCTTTTGCAAGTCAGCTCCCTCCTTACTGCAAAATAGGGTGGATTTGTCAATCTTTTGTTTTTTTCAAGATACTCTAAGGGCAGGAATGGGTCAGGAGCAAGATTGTAGACAGCCAGTTATTTCATGGCTGTAGACTGGCAAGGGTTGCAAGTATTACAAGAAATGCATGGGCATTGGCTGAGCTAGTGTGGACATGCCAGCAGCAAAAATGACAATATTTAAAGGTGCTAAACTATTCTCAGCCTTTGTTTTTAACTTACTAGTATCTGCCTGAGATTTCAATGGGGTTAGCTGCTCCTGGAACTTGGTCATACAGCAAGAAGAAAAGAATTGCTGGAGTATAATCACAGTTTAGAGGTGATCTAATTTAACACAAGAGAGTCTAGTTTAAAGTTGAACTCTTCAAAACTGATGAAGATGCTATTAAAAAGAAGTGGGAGGGATAAATCTTGTCTAATTTGTCTGGGGTTACTGGTTGCCATTTGGAGAAATTTCATTCTCAACTTTATTTGTATAACTTTATTAGGAAAGATTTAGATAGATTCCACTTTATTGTAATGCTACCCCTCTGAAGTAAAAGAGATTTTATTCCTGGCTCCAGTCAGAGCAGTTAAAAACACCTTTAAATTCGCAGATTGAGGTATGTACCACAGAAGCATGAAATGCCTTCCCATTCTACCTCAGAGGGCTCTGCTGAACATGTTGCAGTGTCATACTAGTCTTTGAAATTCTCCTGAAGTAAACCATAAATCATACAGTTTTATTCTTAAATGTTAACTGTATAAGAAAAGTGGAAAGAGAATACCATTTAGATTTTTTTATATGAATGGTGAAATCCGCAAGTTTTAAGTAGATAAAAGCATTAACAGTGTGTCGTATTATCAGGTAATCTGTAACTTGATAAAGCATACATGTACCCAAATTGTAGAAGATGTTATGTGCATGTTATTCCCTGATGAACTGACAACAGGCCTCATGGCTTTGGTCTCAGAATGTTCTGGTCAGAAGCTTTGAGATTTAGATATTTTATTGTTTTGTCTATGTTTACTTAATTAATAGTTTATAGGATACTTACACTGCTGAATATGGATATTTTCCATGAGATGCAACCTATGAAATGTTATCATCCCTGACTCTGGGGCATAAACCTGTTAAGCTGAGAGTTACCCTGGTTACCCCGACACACACAACCAAATACTTTAAGTGTTCTTGATGCTGGAGCCTTTAGTGGTTCTGTAGTGCTACTGACAGTTAAAGATGAAGACAATATGCTTGCATCATATCTATTAAATCACCGAATAAGCTTTTATGAGAGGACTCATTAGGAATCAATTTTCAAGTTCACAGTTACTGGAGATTGTCCTTTAGTAGTCAGGCCTAGACAGTTAAACATATAGTCTGATCTTTGTGAAAAATGTGTTTAATGTATGAAAGATTAATGAAATACAAATTAGCTAAGTCAGTTATCTTCTAAATATTCTGTGAACAGTGGGGAAAACTTCGATGAATACTATATTTATTAGGAGACATTCTCCTTAAGGAGCAACAAACAATTATTGCTACATATCCATATGGGTATGTAGCATATGGGTTAACATATGGGTTAAACTCCAGTCTTCTCTAACATATGAGTACAAAATCAGTAAAGTCAGGTGAAATAAAGAGTTTGGGATTCTTGATGATTTTCCCAAGTCATTATATGAATCTACTAAGGGTAAGGAAATCAGTATAAAGAAAAAGTTCAGAATGAAATTCAGGAAATAGAGTCATTGTGAAAACAACATATGTTTAGAAACATAATTAGAAAGTGCCCTCTCTGGAGTCACCTGAAAGTAATGGCAGGAATATTCTGCCTGAGTGTCTGCTGGCTATTCACAGTATTGCTAAGCAGAGTATCCAGATCACTAACCATAAATAAATAAATAAATAAATAAATAAAGATAAAAATTATAGGTGGACATCTTTTGAAACAAAATTCTTGAAAATGTATTACATTTCATACCTAACTTCTGATTTAAGATGATTCATTTTTGTTCTGGTTATTGAATGTGAAATGCAGTGGTCTGTGTATGCCCGTTGTCTCCTCTGTTGGAGAGAAGAGAGACCTTTTTCACAGGAATCTGAAGAGGCAGTGTTTTTCAGCCTTTCTTGTTAGCAAAGGAATTCGGAGAGACAGGCATTTTTCAACTTAATGGTACATAAATTCTTGGTCTACTTATGACAAATTTTAGACCTGAATCAGAGATTTCTTATAAATAGTATTTCCCTCAAAACCCCTACAAGCTGTAGTTTACTTAAAGTAAAACTAATGGTTTTCTCCTTTGTTTTTCTCACAG
Seq C2 exon
CTGTCAAGATGAGTGTCCAGTGGGCACTTATGGAGTACGGTGTGCTGAGACCTGCCAGTGTATGAATGGTGGGAAATGCTACCATATCAGCGGTGCTTGCCTCTGTGAACCAGGATATACTGGAGAGCACTGTGAAACAAGGCTTTGCCCTGAGGGGGTTTATGGTCTCAAATGTGACAAAAAGTGTCCCTGCCACTTGCATAATACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(54.3=52.1)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(43.5=27.8),PF126612=hEGF=WD(100=18.1),PF0005319=Laminin_EGF=PU(20.4=13.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]