GgaINT0060915 @ galGal3
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55304450-55306319:+
Coord C1 exon
chrZ:55304450-55304578
Coord A exon
chrZ:55304579-55306190
Coord C2 exon
chrZ:55306191-55306319
Length
1612 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGG
5' ss Score
5.87
3' ss Seq
CTTGCTCTGTGTTTTTTCAGCAT
3' ss Score
10.58
Exon sequences
Seq C1 exon
TATGTCCCAGTGGCAGATTTGGCAAGAACTGCATTGGAATATGCACCTGCACCAATAATGGAACATGCAATCCTATCGACAGATCCTGTCAGTGTTATCCTGGGTGGATTGGTAGTGACTGCTCTCAGC
Seq A exon
GTAAGGATCAGCATGTTTTCCTCTATTTTTAATTAAAGGTTTATCTGTGTAAATTAATTAAAAGTTTATCTGTGTAAATTCTCTATTTGTTGGTAAACAAATACTGTGTAAGGCAGAAATTAGGACTTCATGGTGTATTAGAAAGAGATCTTAAAGTTTTCTGCATTCCATTTGCATGCAATTGGAGAATCCACTTGCTGCCTTCCACTGCCCAAAGAAGAGCTGTAGAAAAAGTAAACCAGAATTGTCTCAGAAGGGCACTGTGAAAACCTAAGTGGCAATGATCACAAACTGTAGCAAGGGCAACTTTGACTGGATTCATTATGAAGATTCCTAGGTGTGAGTTGTCAAGCACAGCAACTGCCCACAGAGGCTCCGAAGTCCTCACCCAGGAGGAGGCTGTGAAATGCTCATTGCTGAAAATCATTAAGAGTATGATATTGGACTTGATGATGCCAGAGGTCTCTTCCAACATAACACAGTCTATGACCAGATGAATCTTGATTAGATAGAGGGTTCATAAGCTATTTACTTGTCTGTGCAACTGTGTAACCACGTCCCATTAGTGTTGTGTACATCCCAACACAAGGAGGTTTATATCCTCAGGACAGTCATATGAATATCTGTGGCATTTTAAAAAAGCAAACAAACAAACAAACAAACAAACCTAAAACTGACAACAAAATAGCATTGCATAGACAGCTACAAGTAAGGCTTAGAACAAAGCCAACATTTTCTCTGTCACAGGTCTGTATTCTGTCAGCGGCAATGTCCTCATTCTTCTTCAGATGGTTAACATGCTAAGAAATCTTCTACTATGATTTACTAAGTATTTTTCATTAGGTATTGTATTTCTTTCTTTTATGTTTCAAAGATAGGCATTTTTAGTATCATTCTATCCTTCTTTATCTGGATATAGTCTTGTCATGCTAAAATCAGTGAAGACTTAGTTACCTACTTGAAAAGAAGGGCTGGGCCCTAATTTTCTTATGCTTTGTTGAGTTATGTTATTAAATAACTAGGCATTCTCCAGATGCCCTACTCGATCTATGCAAATCACTAATGACAGAAAGTAATATCTGAAGCAAAATTCTGAGAGGAACAATAGCTTATTCTGTCAGGTACAAAAATCCAGAGTCTGCAACACATGCATGCAAAAATTTCAATCAATCAATTTTTATGAAGAAAAGAAACTGTATAGGGCCCCAGTATATCAACATTTAAAAGATACTGTGCTGGGATTTCCGGGGAAGTACATTCCTAATAACATGTCTCATGGGTTTATAGCATTCATGGTTTGATTGGCCTACTTAAATGTATCTGTCCCAGAACACCTTTGCTGGTAAAACTGTGAGAAGAGATTAGCATCTACAACTTAGTATGATACCAAAATAAATGTGGGGCCTATGCCTGTGGAAGACGGTAGCAAGACATTTTTTAATCACTCCACTTTTAATAGCAGTACCTAGTATCAAAGTCATTCATCATAGCATTTTCAAAACAATTGGTAAAACTGTATTGACTGATGGAAATATATAAGCAGCTCTCCAGCCCTCCGGATACCAAAGATCTTTGTCACTTGAGATTGATTACTTGCTCTGTGTTTTTTCAG
Seq C2 exon
CATGCCCACCTTCTCACTGGGGACCAAACTGCATCCACACATGCAACTGCCATAATGGAGCTTACTGCAGTGCCTACGATGGAGAGTGCAAATGTACCCCAGGATGGACTGGCCTTTACTGTACGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=61.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCAGTGGCAGATTTGG
R:
GCGTACAGTAAAGGCCAGTCC
Band lengths:
254-1866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]