BtaINT0091651 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27842979-27844680:-
Coord C1 exon
chr7:27844552-27844680
Coord A exon
chr7:27843108-27844551
Coord C2 exon
chr7:27842979-27843107
Length
1444 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
ACGCTGTGCTGTGCTTTCAGCTT
3' ss Score
8.04
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAGATTTGGGAAAAACTGTGCAGGAATTTGTACCTGTACCAACAATGGAACCTGTAACCCCATTGACCGATCCTGTCAGTGTTACCCAGGGTGGATCGGCAGTGACTGCTCTCAAC
Seq A exon
GTAAGTCTTGTTTGGGAACAACTGGTCGGCCATGTATTTCCATTTGTTTTCAGTTTCTTTAGGATCAAAATATGAGTATTTAAATAATCAAGAAATAATATATGAATAGTTAGAAGATTTTTTTAAAATTTTAAGTAGCTTTTCCCCCCTCATTAAGAGTTCTCTGCAATGATCCTGTGTTTAAATCTTTTTTTGCATTATTTTATTTTATTATTATTTTTTATAAATTTATTTATTTTAATTGGAGCTTGCTTACAGTATTTAAATCTAACTCATGCCTTGGAAAGAACCTAAACAGCTAGCACTTTGCTTATTCACTGAAATGATTTTCCTTTGCAAAATGAGGGTCTTGTACTCAGAAGCCATTCAAAGCTTCATTCCAGACTTCAAGTGTCATATTGTTTTCCCTTTGCTCTTGGGCAAAAACGGTACACACAATTATGGGAGAAATTTTTTTCTTTTTTTAAATTAATTCACATTTATGTATTATCTTTTGGGGGCCATGTTCCCTACTGGATAACCGTATAGAAATTGTAAGTGTTCCTTCTTTTAAGTAGTTATGTTCTTGAAGCATTGGTATGAATATAAAGCAAATCATTTTACCCCCATAATCTTATGTTACTTTATCTGAGGTTCTCATTGCTCTTTGATAGGCGATGACCCCTGATAATTTAGTTTGATTATGTTCTGCTTCATCCAGTTAAGAGTGTTTATAGTAAATCTGTTCTCACATGAAAATAGGAGCCTTCATGTTTAAAACAAGCCTCTCAGGACAAGTCTAGAGTGGAGTGACAAGTGCAGGTTTAGAGACCACAGACAAGAATTATGTGACCTTGAGTACTTATCTCAAGTCACACCATATTGCCCATCTAATCTCTACTCAAGTGTCCTCTCCTCAGAGATACCTTCCATAAAGGAATAGCTCCCATCATTTTGTCCCCATTTCCCTATTTTATTTTTTCTTATAGTCCTTACTGCCCTTATGTTTTAGCTGACTGGCTGGGTGACTAGCTGGCTGGGTGGCTGGCTGATTGGTTTGCCTGCCTCCCCTACAAAAATGTAAGCTTTCAGAGGATGCTGTGGACCCTGCCTTGTTATCTGCCGTCTCCCCTGGACCTAGCACAGCGCTGGTCATATCTAGGTGCTCAGTGTGGGTTTGTTAAATAGCTAACTCTGTAAGCTTGGGATGATGTTTGCTCTGCCCACCTCGGTCTGCAGCATGTGAATGAATATCATATCATAGTGATGGCCACCCGTTGGCACCAGCATCGCCATCTGGGTTTGAGCCCTGTGTGGAGCACGGTCGTTCTCAGTCCTGATGCTCACTGCTGACCCGTCCACTGAAGGAGCTGTGGACAGGTGGGATCAGGTGGGTGGGATCCTCTCTGTGGGGTGCTGGCCTAGGGACTCGCACTGAACTCTCCACGCTGTGCTGTGCTTTCAG
Seq C2 exon
CTTGTCCCCCTGCGCACTGGGGCCCGAACTGCATCCATACATGCAACTGCCACAACGGGGCCTTCTGCAGCGCCTACGACGGGGAATGCAAATGCACTCCGGGCTGGACGGGGCTCTACTGCACTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329:ENSBTAT00000000434:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=63.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCCAGTGGCAGATTTG
R:
TCTGAGTGCAGTAGAGCCCC
Band lengths:
258-1702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]