GgaINT1017722 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56257590-56259459:+
Coord C1 exon
chrZ:56257590-56257718
Coord A exon
chrZ:56257719-56259330
Coord C2 exon
chrZ:56259331-56259459
Length
1612 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGG
5' ss Score
5.87
3' ss Seq
CTTGCTCTGTGTTTTTTCAGCAT
3' ss Score
10.58
Exon sequences
Seq C1 exon
TATGTCCCAGTGGCAGATTTGGCAAGAACTGCATTGGAATATGCACCTGCACCAATAATGGAACATGCAATCCTATCGACAGATCCTGTCAGTGTTATCCTGGGTGGATTGGTAGTGACTGCTCTCAGC
Seq A exon
GTAAGGATCAGCATGTTTTCCTCTATTTTTAATTAAAGGTTTATCTGTGTAAATTAATTAAAAGTTTATCTGTGTAAATTCTCTATTTGTTGGTAAACAAATACTGTGTAAGGCAGAAATTAGGACTTCATGGTGTATTAGAAAGAGATCTTAAAGTTTTCTGCATTCCATTTGCATGCAATTGGAGAATCCACTTGCTGCCTTCCACTGCCCAAAGAAGAGCTGTAGAAAAAGTAAACCAGAATTGTCTCAGAAGGGCACTGTGAAAACCTAAGTGGCAATGATCACAAACTGTAGCAAGGGCAACTTTGACTGGATTCATTATGAAGATTCCTAGGTGTGAGTTGTCAAGCACAGCAACTGCCCACAGAGGCTCCGAAGTCCTCACCCAGGAGGAGGCTGTGAAATGCTCATTGCTGAAAATCATTAAGAGTATGATATTGGACTTGATGATGCCAGAGGTCTCTTCCAACATAACACAGTCTATGACCAGATGAATCTTGATTAGATAGAGGGTTCATAAGCTATTTACTTGTCTGTGCAACTGTGTAACCACGTCCCATTAGTGTTGTGTACATCCCAACACAAGGAGGTTTATATCCTCAGGACAGTCATATGAATATCTGTGGCATTTTAAAAAAGCAAACAAACAAACAAACAAACAAACCTAAAACTGACAACAAAATAGCATTGCATAGACAGCTACAAGTAAGGCTTAGAACAAAGCCAACATTTTCTCTGTCACAGGTCTGTATTCTGTCAGCGGCAATGTCCTCATTCTTCTTCAGATGGTTAACATGCTAAGAAATCTTCTACTATGATTTACTAAGTATTTTTCATTAGGTATTGTATTTCTTTCTTTTATGTTTCAAAGATAGGCATTTTTAGTATCATTCTATCCTTCTTTATCTGGATATAGTCTTGTCATGCTAAAATCAGTGAAGACTTAGTTACCTACTTGAAAAGAAGGGCTGGGCCCTAATTTTCTTATGCTTTGTTGAGTTATGTTATTAAATAACTAGGCATTCTCCAGATGCCCTACTCGATCTATGCAAATCACTAATGACAGAAAGTAATATCTGAAGCAAAATTCTGAGAGGAACAATAGCTTATTCTGTCAGGTACAAAAATCCAGAGTCTGCAACACATGCATGCAAAAATTTCAATCAATCAATTTTTATGAAGAAAAGAAACTGTATAGGGCCCCAGTATATCAACATTTAAAAGATACTGTGCTGGGATTTCCGGGGAAGTACATTCCTAATAACATGTCTCATGGGTTTATAGCATTCATGGTTTGATTGGCCTACTTAAATGTATCTGTCCCAGAACACCTTTGCTGGTAAAACTGTGAGAAGAGATTAGCATCTACAACTTAGTATGATACCAAAATAAATGTGGGGCCTATGCCTGTGGAAGACGGTAGCAAGACATTTTTTAATCACTCCACTTTTAATAGCAGTACCTAGTATCAAAGTCATTCATCATAGCATTTTCAAAACAATTGGTAAAACTGTATTGACTGATGGAAATATATAAGCAGCTCTCCAGCCCTCCGGATACCAAAGATCTTTGTCACTTGAGATTGATTACTTGCTCTGTGTTTTTTCAG
Seq C2 exon
CATGCCCACCTTCTCACTGGGGACCAAACTGCATCCACACATGCAACTGCCATAATGGAGCTTACTGCAGTGCCTACGATGGAGAGTGCAAATGTACCCCAGGATGGACTGGCCTTTACTGTACGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=61.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCAGTGGCAGATTTGG
R:
GCGTACAGTAAAGGCCAGTCC
Band lengths:
254-1866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]