RnoINT0091314 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52342718-52346827:+
Coord C1 exon
chr18:52342718-52342846
Coord A exon
chr18:52342847-52346698
Coord C2 exon
chr18:52346699-52346827
Length
3852 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CATGCTTGCTCCGTTTTCAGCCT
3' ss Score
8.91
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAGATTTGGGAAGAACTGTGCAGGTGTTTGTACCTGCACCAACAACGGCACCTGTAACCCCATCGACCGGTCCTGTCAGTGCTACCCAGGCTGGATTGGCAGTGACTGCTCCCAGC
Seq A exon
GTAAGTCTTGTTGGAAAAACAACCAATTGACTTCTTATGTCTTAGGATTGAATGATGAGAGTGTCTATGCCACAACCATTTGTTAAATGTATTATAGTCTTTAAATTAAGAACCCTATGCAATGGCCTATCAGTATCTACCAATAAATTGATGTGACTCTGGGAAAAATCTCAATTTGTAAAATGTTTTTCTACTCACTTTTCAGTTACTAACCATCCTTTGATTTACACAAGTGTAAATAAATCAATATCTAATTATATTCTATATCAACATATTAAATATTTATATAATTACACATAGTACATAATGTATATGTAAATCAATGATATAAATGGAAACTCACAGTAACCTTTATGAATTGGATTTATATCTTGTTCCACCAAGAGATCTAGTAAAAATGGAGGAATGAGAAAACTTAAAAAGTAGGATAATGAGGATATATATATATTCAATGATTGATCATAGGTATGACTCCATGTAACTAAAGCTTACCTCATTATGTAGTCTCATTCATTTATATATCAAATATAAAATTATAAATGTAACATATATAATATATGTATATAAAATCAGTGGATGGTTAGTCACTGAATATATACATACATACACACACACACACACACACACACACACACACATATTCCATGTATCCTAGTGTAGCTTCAAACAAATCATTATGTAGTCTTTTATATATTATATATCAATATATTAAATATGTAAATATATCAATGAATGGTTAATCATGTAGCCAAGGCTGGCCTCAAACTTGCTCTGTTGTCTAAGATGACCTTGAACTTCTGCTCTTTTGCCCCCACCTCCTGAGCATTAGGATTACAAACGTGTGCAGACATAACGTGCTTTTGTGCAGTGCTGGGACCTGAACCCAGGGCTTCAGAGATGCCAGGCANNNNNNNNNNNNNNANNNNNNNNNNTCTGTCCTTATTATCCGTTGACCTAAAACAAAAATAGATTTATTTAGAGATCTATCTTTCTGTCATGTACTCATCCAGAAGTGTATGGAACCATGAAGAAGTCAAACCAAATGACGTGAGTCTTAGAAACTTTCTGGGCTCCTGGGCAGACTGACTACCGCAGTGTACCTCACAACTTGTCCCCTCCCTTGGCTCCCCCGAGCCTCTCATACTGCCCTTCAGATGGGAGAAGTATGACGCTAAGAGGAAATGTGTTGATGACTTTAGACTACCCATGCCACGAAGAGAGGACAATGACCATAAGGCAACCTTTGAGAGGCGAGTTTGTGCACATTCACAAAGGATTCAGCTTCTGACCAAAGACAGCTCGTGCCTGCCTTTTCCTCATCACGGTGTTCGTGCTCAGTTGAGATAAAATCTAACATGGCGCATGTATGATAGGTCAGGAACGGCTCTTGTTCTACACAGTGGTTTGTAGGCCATTGAATTCACCCTAGAGTTATAATCAACCTGTACATAGTAATTGGTAGGGAATATGTCTTCATCTGAATATTAGTTTTGCTTTCTCCCATTGCTGAGATAAGAAGCCTTTGGTGAGAGAGGTGTTTATTGTTATAGATGATTTCACAGTATATATTTTAATCAGTTGGAGGGGTTCCAGAAGTAATTGCCATGTGTTCAGATCTGCGTATTGCAAGCCTCTGATGATTTGGGCTGGCACAGGAACAGGTTGAAGAATAGGTGCTCGAAATGAGTGACAGGGCTTAGGAAAGAAAACAAAGATCCGATGTCATTGCTGGAACATGATTAGTCTAATTTGCTCCTTTAAAATGTATTCTTTAGTTTGGAAGTTGGTCACTTCCTCATTTGGAGGAGGAATGTGCTGGAAGGAACAAAAATGAGAACAGCACTGTGAATGGAGACAATAGCACGGCTGTCCTCATAATCACTGCAGAGGAAATTCATTTGTTTGGCAAGCCTTGTTTCTCCTGGGGACCATTGGTTTCATTGATTCCTGTGGTCTCTGGGGGTCCATCTTAATATTTCTTCTTGGCTGGTCATCAGCTAGTTTTAAGAAAGGGAAGTCCTTTACCATGCAGACCAAGACTGTGAAAACTAATGAAGTACATTTAAAGGAGCTCGAGTCCTTGGCAAAGTGACTGTCTAAAGCTTTGTCCCCATACTTACCTTTGGAAATGGGAAATTTGAGTGATCTTTGTTTACAACCTTTGGTCATCGCCAACCCAGGAATAAAGCCTGCTTGCCTTAAGTGGCCAACTTAGAAAAAATACCCTCCTGGCAGTAGATGGTTCATGAAAACGTATTAAGCATCATTAGACATAGTTCGTTTGGACCTGGAGAGATTTCTGCACGGTTTAAAGCTCTTAAAGCTCTTGCTGCTGAATCATGGGGACCAGAGTTTGGAACTCAGTACCCTTTAACCAAGCTGGGGGGAAGGGGGGACATCCCATAAACACTGTAACTCCACTCCCCAGTGCCCTCTTCTGATATCCACGCACAGGCGTGCACACCTGCACACACATTACACATTCACTCGTACAGACAGAAAGACACAGCTAAACTTGAAGTTTATATAAACTTAAAGTTCATATGTACACACAGTACATATGAAAAGAAAAGAAATACTGTTACGGAAGCTGGGTGAAAGAGAACCAATTGGATTTTTCTTATTTTAGAGGTAGGTTTTTGAGTCCTGTAGGCTACATCAGGTAGGGGGACATTTCAGTTGTCTTCGTTCTGCAGCCATGCTTATGTACGGAATAGCGACTATCGCTGTGAATCTGTGTGACCTAGGATAAGATCCTGTTGCCCACTATTGAACCAAAACTTCCTCACCTGAAAAATAAGGAAGGCTACTGAGAAAACCCATCGTAATACCCCTGAGGACCAAGCGTTCTCCACTGTTACTCTTCTCTTGTTCTTGGGTAAAGACGGTGCATGTGTTTCTGGGAAATACTTTTCATTTTAAAATGACTTCAGGCTCATTTATTTTCTTTATTGCTTCATAGTCTCAGTCAGATAATAAAATAGAAATCGCAAGTAGCCATCTCCTTAAATGGTTTCTTGAAGATATAGTATAAATAAAACTACATTTTTTTTAATGAATCAAGTTCATTTTGTCCACATTTTATGTTGCTTTCTAAAACCTCTCCTGCCGACAGTGGATTTAGTTAATGTGTTCTCTTCTTCCTCCGATCGAGAGTCATAAGAACTCTCTCATAGGAACTTTAGCACATAAAATGAGATTCCAATGGCAACCCTGGAGACTAGAGACCAGGACAGGATTGGCTAATCAAAGCCCCGAACCCATTACCTTGGTGCTGCAAGAAAAATCAAAGTTCTAAGCCCATGACCTAGGTGCTCTCAGGGAAATCCCACCACCATCTGATTCTTACTCAGTTGCTCCTTCCTGGGTGAGCCTGGGTTCAAGAAGAAGCTCTCCTCATTCTTGTCCTCCTTATTTCACCTGATTGTTTCTTCCATCACTGCCTCTCAGTCTGCTGGTAGTTTTGCTTCCTCGAAAAACAGAAGCACTCAGAGTGTGACTCAGACTCCTGTTTTGTCTTTGTTCTCTTCCTTGGGTCTAGAACAGTGCTAGGTACCCACTGGGTATGATTTATTTAACAACTGACTTTTTAAAGTAATTCTTGTTCCCTCGAGTCCCTTGGAAGTCCATAAATGTGTGTAATTATGTCAATAATGTTGGTAGTTATTATGACCGGCATTGTCTTGTGGGGTTGGTACAGAATTCAGTACTCAGTCTGTGAATTGTGAGTATCTTGACTTTATTAGCGGTATGAACCCAGCACGTGGAGGGTAGCGAGAAGGTGGGTGAAGTGTTCTGTTTGGTGCCTACCTGGGGACTCCGACTCACCTCTCATGCTTGCTCCGTTTTCAG
Seq C2 exon
CCTGTCCACCAGCCCACTGGGGTCCGAACTGCATCCATACATGCAACTGCCACAATGGAGCCTTTTGCAGCGCCTATGATGGGGAATGCAAATGCACTCCTGGCTGGACGGGGCTCTACTGCACTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]