HsaINT0101774 @ hg19
Intron Retention
Gene
ENSG00000145794 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:29634]
Coordinates
chr5:126771053-126774259:+
Coord C1 exon
chr5:126771053-126771181
Coord A exon
chr5:126771182-126774130
Coord C2 exon
chr5:126774131-126774259
Length
2949 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CTCCATACCTGTAATTTCAGCAT
3' ss Score
3.13
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAGATTTGGGAAAAACTGTGCAGGAATTTGTACCTGCACCAACAACGGAACCTGTAACCCCATTGACAGATCTTGTCAGTGTTACCCCGGTTGGATTGGCAGTGACTGCTCTCAAC
Seq A exon
GTAAGTCTTGTTTGAGAACAATTAATAAACTGTTCTTATTTGTTTGTTTTCAGATTCTTTAGGATTGAAGTATGAGTGTTTTTATATAATCAAGAAAGAATATATGACTAATTAAAAGACACATTCTACTTTAAATTCTTTTTTTAAAATTCTTTTTTTTTTTCCCATTACGACCTCTATGCAATGGTCCTATGTTTAAATCCAAATAATGTCTTGGAAAGAACCTAAATATGTAACATTTTCCTTATCCCCTTTTCAGTGATTCATCGTCCATTGAAATAAAGCAAAAACAGCTGTATTGAGAAATCTATCTCTTCATTTTGTGTTTATCTGGAGAGTTAATTACAGAGAAAGAAAAAATGGAATTAAATGATGTGAGCCTTAGAAACCTATTGGGAACCTGAGCGAACTGCCCACCTAATATGCTTAGCTTCACCTTGGCATCACCCAAGTGCCTTCCACACCACTGGATTTCAGACAGGAATTGTGTGACCCTATAAGGGACTATATAGATGACTCTTAGAGCACCCATGTCATGAAAAAAATGACATCGACTATAAGTCATTCATGAATGTTTTGAAAGGGTCAGTGCAATGTCTAAAAGTATTCAACTTTTGACCAAAAAATAGCATATGTATGGAGTAATCTGGTTTCATTCATTTTAAATTTTATGAAACACTCTCAGTTTATATTGAATTCCCCCATCATGCACATAAGAGAAATCAAAGAATGACTGTGTGCAGTCATTTTACATGGTGCTTTATTGATAATTTAATTCAAACTTCACAGTTACAAGCAACCTGCAAATACTAATTGATGAGCAATATATTTTTTGCTGGAAGATTTTTTTCTGAATGTTAATTTTTTCCATAAGTAGTCCAGGCTGTACCCCATTTTTTAGGAATAAGGGAAGAGAGCTAATAAATCTCAGAAGTGTAGCTCTTTGGTGAAAGAAGTGTTATGCGATATGATTTCACTCCATTCTGGGGGCATCACTTCAGAAGAAATCAGTCTGTTTAAATCTACATGTGTTGCAAGGGCTCTGACTGATGGTTGGGCGTATGGGTTTGGGAAGAGTAAAAGGTCCAATATCATTGTCACAAAATGATTGATTTATATTGCTCCTTTAAAAAGTAGTCTTTATTTTGGAAATTTGTCCCTTCCTCATTTGGAGGAGGAATGTGCTGAAAGGAATAAAAATAGAAACACAACTATGAATGGAGACTATAGTGTTGCCTGTCCCAATAATCACTCCACAGGAAGCTGACTTATTTGGCAAAAGCCTTTGCTTCTCCTGGGGATCATTGATTTCATTGATTCCCTTATGGACTCTGTGGAACCATCTTCATATTTCTTCTTAGCTGATTGTGAGCCTGTCTAAAGAGAGCAAAGTCCTTCACAGTGAAAACACAGACTTTGAAAACTTAAAGGGGTACATTTAAAGGGGCAGGTGTCCTTGGGAAAATGATTTTTTAAAGCACTATCTCTACGTTTACCTTTTGGGAATATAAAGTTGAGTGATGCTTATTCCCATTCTCTGATCATAACAAATATAGGGAGAAAAACCTAATGGCAGTGGGTTACCTCAGAAAAATATATTGTGAACATAAATGGGTTTACAGAAGCTGGTTAAATATCATCTAAGGAATAGGTTGTTTTAGGTAAAGAGTGCTTCACTGAGCATCAAATGGGCTAGACGCTTCAACAGTTTTCACTGAGTCTCACTGTGGCTTTGGGAAAGCTGTATTTGTCTAACAAATAACAAATATTATTATTAATCTATGTGACCTTGTACGAGTCACTATTAACCTTTTGTGTGCTCAGTTTCTTCATCTGTAAAATTAAGGTGTTGTATTTAGAAAATTTGTTCCAATGCTCACTCGAGACCTCAAGTGTCAGCTAGTATTTTCCCCTTGCTCTTGGACATGGTGCACACAATTATGGAAGAATTTTTTTCATTTAAAAAGTTACTTCATATGTATTATTGATTGTCTTTATAGGTCCACATTCCCTATGGGGTAGCCGTATAGAAATTACAGGTGGTCCTCCTTTTATGCAATTATGTTCCTAAAGTATTAATATGAATAAAAAGTATTTTTTGTCAATGAAATTATTTTACCCCCTGATCTTATGCTATTATTTCACAGATACTTTATCTGACTTTCTGATGTCTCTTCAATCGGCAGTGACCCCTAATGATTTAATTGTATTATTTTCTGGATCTTCCAGTTAAGAGTTTTTACAAGGAAACCAATTTTTACATACCGCTGGGAACCTCAATATTTAAAAGGAGCCTGAAGTGGCAACTCTAGAGTAGACTGAAGGGTACAGGATTTAGAAATTGTGAACATGAGCTACATGGCCTTGGGTCCTTTAACCTCTCTTGAGTCAAGTCATTTTCCACACCTTATCTCTGCTCAAATGTCCTCTCCTCACAGAGGCCTTCCTCAGAGGAGTAGCTCCCAAAATTATTGTCTTCCTTATCCTCCTTATGTTTTTTCATAATACCTACCACCATTGATTTTTCATTTTGTTGGTTGGTTGGTTGGTTTGCCTGCCTCCCCTACCAAAATAGAAGCTTCCAGAGGATGGTTTGGACTTTGTCTTATACTCTGCTATCTCCCTTGGGCCTGGAACAGTGTTGGGTACATAATAGGTGTTGAATATGTGTTTGTTTAATAACTGAATCTGTAAACTTGAGGTGATTTTTGCCCCAGCCACCTCACTCTGCAGTTGTAAATGAATACATATGTCAATAATGACAGTCGTTGTTGAAGTTGCCATGGCCATCTGGGATTTAGTGCAGAATTCAGAGCAGTGTGCTTTCTTAGTCCTGATGTACACTGCTAACCTCTCACATGCAGGGAGATGTGTAGAGGTGGATGGAATTCTCCCTACTTAGTATTGGCCTCAGAACTCTGATGGACTTCTCCATACCTGTAATTTCAG
Seq C2 exon
CATGTCCACCTGCCCACTGGGGCCCAAACTGCATCCACACGTGCAACTGCCATAATGGAGCTTTCTGCAGCGCCTACGATGGGGAATGTAAATGCACTCCTGGCTGGACAGGGCTCTACTGCACTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145794-MEGF10:NM_032446:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=63.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)