GgaINT0061256 @ galGal3
Intron Retention
Gene
ENSGALG00000015008 | ZNF366
Description
NA
Coordinates
chrZ:26073181-26080254:+
Coord C1 exon
chrZ:26073181-26073372
Coord A exon
chrZ:26073373-26080079
Coord C2 exon
chrZ:26080080-26080254
Length
6707 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTGTTTTTGTTTTTTGACAGCTG
3' ss Score
10.13
Exon sequences
Seq C1 exon
GGTGTAAAAGAGCACAAATGTGGAATCTGTGGACGGGAGTTTACTCTGCTGGCCAACATGAAGAGACATGTCCTGATCCACACCAATATCAGAGCCTATCAGTGCCATTTGTGCTTCAAGAGCTTTGTGCAAAAGCAGACTCTCAAGGCGCACATGATTGTTCACTCCGATGTCAAACCCTTTAAGTGCAAG
Seq A exon
GTGAGTGTATCTCCTTTGTGGCAGAGACATAATCTCACTGTTTCTGGGATATTACCACCTTCTGACATTATAGAATTTAGAAAAACATGACTTGCTCACATTCTATAGTTTTATTTAAATTAGCATAAAACAATCTGCTTTCCATTCTTGATCCAGGCTCTGCTTAGGTAGCGCAAAAAGAATGGAGCTAAATTTCTGTGATTTGCTCCCTTCCCCTACCATATCTGTAACTTTAATCCTGAAGTATTGTTTCCCACATTGTAACCATATAAAAGCCACCACAGTTTGAGGACAACAAACATACCTGGCAATTGTCCACAACAGCTGTCCAATCTGAAGTCTGAGTACTTTAGTTGTTAGCAGCTTCAAGCACTGACTAAATACACAGATCATAGAATCATAGAATGGCCTGGGTTGAAAAGGACAACAGTGATCATTGACTTTCAACCCCCCTACTATGTGCAGGGTTGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTGGAATGCCTCCAGGGATGGGGCATCCACAACCTCCTTGGGCAACTTGTTCCAGTACGTCACCACCCTCTGTGTGAAAAACTTCTAATATCCTACCTAAACCTCCCATCTCAGTTTAAAACCATTCCCCCTTGTCCTATCACTATCCACCCTTGTAAACAGCCATTCCCCCTCCTGTTTATATGCTCACTTCAAGTACTGGAAGGCTGCAATGAGGTCTCCCTGGAGCCTTTTCTTCTCCAAGCTAAATAAGCCCAGTTCCCTCAACCTTTCCTCATAGCAGAGGTGCTCCAGCCCTCTGATCAATCTTAGTGGCCCTCCTCTGGACCCGCTCCAAGAGCTCCACGTCCTTCCTGTACTGGGGGCCCCAGGCCTGGATGCAGTACTCCAGATGGGGCCTCACAAGAGTTGAGTAGAAGGGCACAATCACCTCCTCTCCCTGCTGGCCACCCCTTTTTTAATGCAGCTCAGAACACAGTTGGCCTTCCGGGCTGCAGGCACACACTACTGGCTCATGTCCAGCTTCTCATCCACCAGGACCCAAAAGTCCTTCTCCATAGGGCTGCTGTCAAGGAGTTCTTCCCCCCAGCTTGTACAAATACCTGGGATTGACCCAGCCCAAGTGCAGCACCCTGCACTTGGCCTTATTGAACCTCATTAGGTTTTTGTGGGCCCAATTCTCCATCCTGTCCAGGTCCCTCTGGATAGCTTCCCTTCCTTCCAGCGTATCGACTGCACCACTCAGCTTGGTGTCACTCACAAACTTGGTAAGGTGCACTCGATGCCACCTTCTGTGTCATTGATGAAGATGTTGAAGAACACCGGTCCCAGGACCGACCCCTGAGGGACATTGCTTGTGACCGGCCTCCACCCTGACACGGAACCATTGATCACAACCCTTTGGCTGTGTGATCATGGAAAAGCAGCAACCTGGACTTCACACGGCGATGCAGTGTGATAGTTCAGGGAACTGCAGAAGGCATTTGAATGGGCCAAATGTAGTCACCAGGCTGAAATTCAAGGCAGGGCATCAGTATTTTAGCAGACTGGCCTCTGAGACCATTTGGAAATGGCAGATCACTGCCTCCCCCCAGTGCTTTGGAGGCTGATATTCCTTCTCCATCCCCTCTTCCTTCCCTTCCCCAGAAATTTTGGAGGCTTTCTTTTTTTTGACTGTTTCCACCTCTAATTTCTTCCTTATGAGTTATTCATGCTTACCTTTTTACCTGATGTCAGACTCTACATCTATTATTTTTGCTTAATTTCTGGTCCCTAATCATAATCATACTTCATAAAGGAAAAGATTCGGGGTTTTATTCCCACTTTGATCTGCTCTAAGAGGGCAGTAAATATGGAGAGGAGCATATTAACCAGTTTACGCCTAAGTAACAGAAGACTGATCTGGAAACAATTTCTAGAACACTTTCATCCAACATCTTCATGGAATTAAATATTTTCTTAAATGGACTCTCATTCAAAAGCAGATCTAGATGAAAACATTTGAATGGAATTTTTTTTTGTCTTGAAGAGTGTAGAACTTCAAAATGTTATATGAAATTATTGCTTTCAGTGCTAATTTTAATAGGAAAATATCAAAATTAGTATTTTTGAACTCATTTCAGTGTCAGCATTTTGTTACATTTTAGATGTAATTTAAACATTTACATTTTAAAATTATATTTTGTATACTGGCACTTAGTCTATATTGAGAAAATAATTTCTCAATATTAGTATCAATATCAAAACATTGATAAAATAATTACTCAAGCTACCGAAAAGCCTGAGTAGTTCCATGTCAAGTCTGCTGGAGATTGTTATTCTTTGAACACACCTGCAACCCTGCGTCTTCATTCCTTTTCGGTCAAAGTCATCCTCTACCCTTCAAATTTCTGAAAAGAAGCTCGATTGTTTGATCAGGTGTTCTGGATGAGGTATGTGGATCCATGCTTTTTCTGAGACAGGTGTTGAGTAACTGGCAGCTTGTGTTCCTGATAGGGTTTGGTAATGACAGACTATTAAAACTTAGAATGTCAACAGTGTGAGCCAGGAACTGGAGTGCCAGCAGTATACTTTCCAGCCAGTAACAAAAGCTCTTTAGGAACAACTGTTTTTCTTCTTTATTTATTTGTATTTATTTATTTGCTTATTTTATTTTATTTTTTTTACTTCATCGTCACCCAACATTCTGGGAGAAAAGAAACTGCAAGTTCAGTGAACCAGTATCTACTTTGGCTAATGGGGTATGAATCAATGTTAACGACGCTAAATGCACTGGAGATCATAACAATAAGCAAAGGGAGAACAAATGTTTGCTCTTCGGCACTATGAACATCCCTATTCTCACTGGCAGAGCCTTTGAAGGTCTCACAAGTTTTTCTGGCTGGTATTCAGAGGGTTAAGGCAATGACCAGATAGCAGCCTTTTGGCACCAAGCTCCTCCTCAGCAGAAGGAAGGATATAGCTGTATGAACAGCCTGCTTAACAATGGCTCACATGTCCCCAGGGAACCGCCTGCAAATAGATTTCATCTTGCTTTCTCTTGTACTTTTCAAAGCTTCCTGTTTTCTCACGGTCCTTTTGGACAGTTTACAGTCTTTCTCCCTCTCCCTCTCTCTTTGAGGAAAGGAACACCCTTCTTATGAAGGGTAAAAAAAAAAATAAAGAAGAATGCAAGGGAAAGAGAGCACAGCAGTAGCCTTTCTACTTTACCACATGCAGTGGTTTTCTTTACCTTTTTCTCACAGCAAAGAAAACATGATGCTTTCCTATGTGTCTAATCACAGCTAAGCACAGACTATCTGAAAAGAGGGAGTAGCAAATAGTTGTCCCTTCTGTTTCCTCACCCAGTTGAAGCCTGGATCTGTTTCATTTTTCTCTGAAGAATGAACATCCCCATAGCCTCTGAAGGCCTGAGACCATGCTTTCTTCTTCTTTGTTTTAAACAAAACCACAGAAGAGTTCTGAAGGAGTTGCTCCAAGTGGTGTAACGGTGCTCACTGTGACTGTCAAAAGATGATTCTCTGAAATTTAAAGATCCTTCTTGTGCAGAAGTTAACAATGCTCCTTATCAGCCATAAGGAATGTGATGAAGCTTTCTCACATGCAGCCAGCCAAATATACATCGCAGCAGATATTTTGAATTTGCTACTGTAAATACACAGTTAAAGGTGAGCCTAAACAATTTTGGTTTATGACTGCAGATCAAAATATCTCCTTTCCAAGTACGAAGGAATGTACTTATTTTGAATGAACTGGACCCTGTCCTTGACTGGAAGCAATCTTCTATGAGACATAGTCTCTGTGCCCATCTGGTATTGCTTTTTCAGAAGTGTCAGTCTACACCACTTTTATCCATAGCACATGAAACTGTGGTTTTAGACCAGGACTTCAAACCAAAGAAAAAATGAGATATAAGTACTTTGGGAAAAAAAGAAAACAGACTGGCAAATGTGGAAGGGTGCTATTTCATGCTGTGGTTTAGGAAGAAAAAATTTATTGTTAACCTGAGTCAGCATTTCTAACACACCATGCTGAAGCGCACCCAGTGCAACAAAATGTGTTCAGCAGACATACAGCTGATGCCTTTCTCTTTGGGATGAGAATGTTATTTTATCTAATCTAGAGAGCCTAAAATAAGGTCCACAAGAAACCATGCTGTTCCTGTTATCTCAATGTCTTTCACATGAGCTATCCATCCATCTGAATGCTCATGTTCTGTGCTGCATTCTTTTCCATGGTTTTGGATCATCAATGCTCCCAGCCCTGTCCTACAGAGAAAGTAAACATTTGCATCTTCCTAGTTTGGTCTGCAGACCCAGTCAGTTGTGCATTAGCTGTGAATCTCACCTAGCACTGACTTGCTGTCTTCTAGCATGTGAGCCTTTGAACTGCTCTCTTCACGCTCTGAATCATGAGCATTTATCTGAAACTTTTCTTGTCTCTTTTGAAAGGGATGACTTACCAGATACCATGCCACATAGAGCCATCACAACCCAAAGTATTTTTTATATCTGCACTTCTTTCATCTTTCTGCCACACATCTCAGCTCTGGTACCATTTCTTCATGTCTTCAGACAAGACTTCAAGACAGGAAGAAATTACACATCCCTACAATCATGCAGGACTTTGGGAAATGGAAAACCTACCTCCCTTAGTCAGAGACACAACATTATTATACTGTAAGGGAATAACCTTTAGGAAGTTGCCTCGCTAGAAAGAAATGGTGCTACTAGACAAATTTTAATACTCAGTATTCTATAAAGACACAGATTTGTGTGAAGTACTCTAGTCAATTGCCTGTTGAATCAGATTTTCCTCTAATATCAATACAGATGGAGAGGACCTAGCTACCAGAAAATAAAGCTGGTGAGAACATAGGTGAGACAGAAGATCTGTCTTGGAAGAATCAGATAACCAGAAGCCTTCTGCTACGGAGCATTAGAGGAGTATTGTTACTGACGTTCTTATAGGCAGAGAAGTATCAACACATCATAGACTATTGAAGCAGCTGTCAATATCTGCTCCTCTTCCTTGTGATTTTTCTGTGCTGCTCAGTGCTTCTTCTCTTTGTTTCCTCACAGCACATTCAGAAGGTGTTTTGGTGCTTTCATTTCACTGAATATAATTCATCACGTACACTAGCTTTCTTTGAACACAAAGGAGAGACAGTTCTCATTCCTGAGTGGATGGATGACCAATCAACATTAGATATCTTATTTTTACAAATTCCTAACTCGTTTTCAGTAGCTGTTTTTTTCCCCACACTTTCTCTGGGAACATCTTGTTGATAAATTTATTAGCTAGAATATTTTATTAAAATCATAGAGAGAAAATGATGCATCTGAAGTAAAATAATTTTAAAAGCAAATGAGTATTTCCAGAATTTTTCTTTTTGAAGTGTTCAGTAAGTTCTGCTTGTTTTTAAAAATCAATACTCTTCAAAATTTTTATGTCAGCAAACTGCTTTTCCATTTTGGTTTCAAGAGCAAAAATTGCACAACTACTTCATCTTATTATCATTTCACCACCCCGGTTCCATCCAAGGAATCAGAAGTCAGATTAGACCAAAAGTACGGTGGAGCCTCGTTAATTGCTTTTTAATCATGTTCTGCCAGATGAGTACACTGCTTGATAAAATTCCTGTTACTCAGTTACAGTGACTATGTCTTGTATAGTGACAAAGATGGTGGTAAGATTATTTGGACAGTAAAATTATTTGTCTAAAATCAGTGGAAAAAAAAAAGGTAGAAGTAGAAAGCAAACACAGATTTTACATAGGATGGAAATAGCCACTTGAATGTGAATAAAATTATAAATCCTATCAAGGAAAGACAAGACAAGTAAGGCAAGAGGCTAATAGTACTGATGTCAAACTCCCATGTCTTGAGACTACATTTGATTTATAAGGGATGGAACTACAAAAGGACCCATCTAGAAAAACAACAATGAAAAAGTTCTTTATTGTTTCATCAAAGGGAAACCTGTAGGATCAATGGCTCAGTTGACAGGAACACGCTTCAGGGAAAGCTGAGTCATTCTTATGGCCCCATGCCTGTTTAAATTCCAGCTTACTCACCAGAGACATCAAAATACAGAAGCTGGTAAACACAAGATGAGAAAATCAAAGACAAAAGGGAGAGAAAGAGGCAAAGAAAAAAAAAAAAGGAATTGTTTTTTTCCCCAGCTTTAAGCAAAATGTGCAGTCATTTCTAATACTCTAAAGGAGAAGTGATATTCTGTTTGACTGTTTCACTGAAACTTCTCATTTAATTATGTGTCTCCATCTCTGCCTGGCATTATTTTTGAAGAAAGGATAGTTTTGTAAACTACAGAAAAAATAGTAATAGAAAGTTATAAGTCCATTCAAGTCAAGAGCCTTTTGGGTTTCATGCTTAACTCTCCCCACTTCTTACAACACTCCCTGATTGTAAGTAATCCGTGACTGTGTGTCTCTCTTAGTCACCACTTTTAAAAAGTGGCAGCAAAACAGAAAGCCCTTGAGAAATCACACTCAACCATATATACTTCTCTGTAGAGTTTCACTTGTATAATAAACTGCAGCCAGAAGTTGCCAAGGCTTGCACTGGGAAAGATAGGTTCTATTTGCTTTGAAAATATTCACCTGGGAAATTCTCCTACAAACTAATTAGCTTCATTCTACTGTTTTTTGTTTGTTTGTTTTTGTTTTTTGACAG
Seq C2 exon
CTGTGTGGAAAGGAGTTTAACCGAATGCACAATTTAATGGGACATATGCACTTACATTCAGACAGTAAGCCCTTCAAGTGCCTCTACTGTCCCAGCAAATTCACCTTGAAGGGGAACCTCACCAGGCATATGAAAGTCAAACACGGGGTCATGGAAAGAGGATTTCATTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015008:ENSGALT00000024201:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]