RnoINT0168110 @ rn6
Intron Retention
Gene
ENSRNOG00000017249 | Zfp366
Description
zinc finger protein 366 [Source:RGD Symbol;Acc:2322904]
Coordinates
chr2:29484252-29494344:+
Coord C1 exon
chr2:29484252-29484443
Coord A exon
chr2:29484444-29494169
Coord C2 exon
chr2:29494170-29494344
Length
9726 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CCGGTCTCTGTCTCCAACAGCTG
3' ss Score
10
Exon sequences
Seq C1 exon
GGTGTGAAAGAGCACAAGTGCGGGATCTGTGGGCGTGAGTTCACCCTGCTGGCCAACATGAAGAGACACGTGCTGATCCACACCAACATCCGTGCCTACCAGTGTCACCTGTGCTACAAGAGCTTCGTGCAGAAGCAGACCCTCAAGGCACACATGATCGTCCACTCTGATGTGAAGCCTTTCAAATGCAAG
Seq A exon
GTGGGAAGAAAGGAGGACTCCAGGGGCTATGCGAATGTCTGACAGGCAAGACCCTGGGAAACCTTCTGCTAGATTTCTTCAGTAGTACCACTGAGGCTCAGAGTAGATCTGTGGTCCAGTCCAAGTCGCTTCTCAACTCTGACCCTGTTTCTGCCACAGTCCTTCCCTGGTTCCCTATTCACATGGCTGTGACCTTACTGCTTGGGTGGTGGGTGGGGAGTGGGCAGCCAGTCATGAAAACTGAGTGTAGGAAGCTCGTTATAGTATGGCTTGGAGGGCAGGGTGGGAGGCACCGCTGGTCTACAGAGGAGAAACCATGCTGGCCCTGTTTCTCTTATAAGTCAGTGACTAGACATAAAAGGGAACCTGAAAATCTAACACATTTCCTTGGGCTGAATCTAATACTGTGAGAGCAGACCTCCCCAAGAGGAATCTGGCATGCCGACTTCATTCTGGATAGTTTCAATGGTCAGATTGCTAGTTCTTAAGATGGTTGCAATGATATTCACCATAGCCAAGCTATGGGCACATCAGAGGATGGTCAGTAGAAGAGGAGCTGGTTCATGTACACAACGGAGTGCTGCTATTCAGCTATAAAAGGAACAAAACCCTGGATCTATGTCAAACATGAATGGAGACCATATTGGAGGACACGATGTTAAGAGAAATAAACCAGGCATGGAGAGACAAATATTGCATGTCCTATCTCATACATGAAAGCTAAGTTGAGCATCATAGCAGTAGAGTTGAGAAGAGTGGTTACTAGGGCTTGGACAGGGGAGGAAGGAGAGGGGACAGAGGTTGGTTAGGCTGCAGAAATATAGTTAGGTGGGAGGAATATGGTCTAGTGTTCCACAGTACAGCAGGGTGACTTGCTATTAAGGTTTTATCGAATATTTCCCTGAAAGAAAGATTTTGAGCACCCGGAACATCAAGACCTATTAGTGATGGGGTACTGACAACCCTGACCTGCTCACCACGTGTTCTACACATTAATCTAAATATACCCTGCATATATGAATAGTTTCTATGTGCCAATCCAAAACATTCTGAAGAGGTAGAAAGGGATTCAAAGCTAGTCCCCCCTAAAGGACCCCAGAAATGCTTGTGTGGGATGGGGAGTATATGAGAACTCAGCCTCTACAGAGCTTTCTCTTTATAGCGGAGTACCACCCGGCCCAGGGCCTACGCTCTGTTGTTAGAGCAGCTGTGTCGGCTGACTTTTACTTTGGTTTATTCTTGTTTTATCAGCTGAGAGGGTGTGTAAGCTCGAGATCTTACAAGACTATGGCTCTCTGAGGCTGCCCTGCTCCATGGCTGTTTCCGGGAGAGTTGCTTAGGCCTGCCTGGGTAGTTGGGGGACCTCAGGGGTAGGTATCATCTCGGTCTGGAAGAGAGAGCAGAGGGGAGAGAGGAAATACTTCGTTCAGACAGTGGAGTGTATCTGTGTGAGATCTAAATTTTCCTTTTCTGCTACTGCATGTTGTTGGGCCTGTGGGTGACTCGCTTTGCAAATCTGCGTCCCTGCAATTGGATTCCTTCTTCTAGGAGGGGTTGTGGCCCTAACCCCTCCGCAGTGTGGCCCCCACTTGAAGGAATCCCTGTGAAGTGGACTTTTTTCCTGTGTTGGCAGCTTCTTCACAGGGTGAGAGGTCAGGAACCAGAGCTTCCCCAGGCTGTGTGGACATTGTCTGAGGAGGGGCCTTCTCCCTGACTCCTTTCCTGCCACCCGCTTCTGTTTCCCCTTCTTCTCTCCAACCTTTCAGTGGTTTGAAGGCCCGAGTTATGCCCATCTTGAACATGTGAGCTAAAGGAGGGGAAAGCAGTGTGGGGGATAGGTCTGCATCAGGGCCCAGTGTGGAACGGAAAGGCAAGGCTCCTTCAGAGGGCATAAGCAGCTTCAAGGGCAAATAAAGCTCTAACTCAGACTCAGGACCCCCCAGACAAAGAAACCTGTGAGCAGCCCCAGCACTCGGGTCTCCACAAACACCCCTTCCTTCTCATCTCAGACACCCCTCTATTTTCCTTCTCACTCCATCAACCCCTCCTCAGTGATTGACCATTGACAGTTGCTCTGCCCGCAGAGATTCACTGTCTCCAGGAGTGGAGGTGCCAGCAGGTTCTCCTATACTTGAACGTCAAGCGTGAACCGCATCAATTACCTCGCCAACTGGTTGACTGCAGTACAACTGTTATTATATAAAGGGAGACACCTCTTAGTTAATTCTCCGAAGAAATGAACACCCCAGCAATCTCCCTTCTGTATTTATTTATTCAGATCTCTCTGTAGAAATATTGACCCTGAGGTGGAGGGGTAGGTCAGAGGCAACACAGTCTGGGGGGTGGGGGAACCCCTAAGATGGAGGTCAGGACAAAGCCAGTCTGAGCAGTGTGTGATCTGGGGCCCTTCCTAGAACAGTTCTGTTTCCCTATCCTCAAAGACCTACAAGATTTCTTGGACCTGAGAGTACATTAGTATCTAGAAAGTTCTCTATAGGACCAAGGCACAAAAGCTGCTTGGAGTAGTATGCACTGGGCCTAATGCTTCAGTGGGCCATCCTGGATGAGTGTGTTTGGCCTCCATTCACAGACATGTATGTCCTTCTCCACCCTGATGACTGTGCACCATACATGGTGCCAAGAGCATGGGGCAGTGAGCTGTGTGGCTCAGAAACTCTGTTTTACCTTCCTTAACGCTCTTGGTGTCTGGCCCACATTCCCAGATCCCACAAGAAAGTACAACCCCAGCTTTGACCGGAGAGACGGTTTACCCCGAACGTGGGGAAGAGGAGCTGGACTGCTCACCTACAGGGCTTCTCTCAGAAGGCCAGAATATAGCTCTTCACCTAGAGCATTGTCTGTTATTGGGAAAAGCAATTTGGAAGATAAAAGACATTCTCATCAAACATAGCTGGCCCTTCTCCAATACTTAGACATTTCTGAAATAGCAATCCATGTAGGTCACCGTGATGGAGCCCTTTCTTCCTGAGTGCTCCGGAAGCATGCTGTCAGGTTCTTTCCCTCCTTGTCACCACTCCCTCACAGTGGCACCCTTTGAGCTAGCCTATGGCATCATCACTGTCTGTTGAACTGTGAGGTGCTGTGTCAAACAGGTTTCTTCGGGAACCTGAAAACCACAGGGTAGAGAGAGATTCGTGAAGCCCCAGGCCCTGGTTCACGTCTCTCAGAAGAGCAGTGTGGTCATGGGATATCCCGTGGGCCTTGCTTCCTATCCATGTTGAGCTGGATAGAAAGCTGTCCCTGGATGAAGGTTGTAGGGTATTGGAAGGTTGGAGGAGAGATGGAGGTCACTCCTTCATTGCTATGCACTCCAGGGCCAACTGAGACAAATGCCTAGCCAGCCACATAGCCATGGTAGGAATCAAGCCTAACCAATCACATCCAAGTTTGGGAGTCATAACGGGGATAGTTCTTCCTCCTCACGATTGACAGGACAGGCAAAAAAAAAAAAAAAACCCAAAAAACAAAAAACAAAAAACCAACCGAACAAACAAAAAACCAAAAGACAAAAGGCTTGCTGTAGCCCCAAGCAATTTGTGACAAGAAAGCTTCTTCCAGCAGCAGATTCTGATTTCTTGGGATTTTTGCCATTAAAATCCCCTCCCCAGCATAAACCCCGCTATGGCAGCGTGAAACAGTTCTCAGTGGAAACAGCTGTCCCCAGTGAGCAGCAATGTTCACTAGCTGTAGAATTAAGTATTAACAACAGGATGTTAACAAGAAGGAAGTTTTCCCTTCTATGTTCTTTCCTTTCATATGTATGTATGTATGCATGCATGTATGTATGTATGCATGTATGTATGAAATGACTGCCCTTCTGGACTCTTGCTATTGGCTCGACTTCTAGACTCCTTGCTCCTGGCAGCCAGCCAGAGTCTGTCCAGAGACCCAGCCTGTAGGCTTAAGCTCCATTTCGTAGATATGCTTCCCAGATTTGGCGTGAGCACGCAGCTCTCGATTCGGATACTGTCTGCAGTGGCGGCGCCCCGTAATAGCCGAGAACCAGCTGCCGTCTTTGGAAAACCTATCCAGGAAAAGCTTCCATCTAGAATTTCCGGGACAAATTCTCTGTTGAGATGGGTGAAGCCCAGAGCTGCCTAAGTTATGAATCACCAGGTCATCTATAGCCTTTTCTACAGCAGAGGGCTGAGGGGAGGCCTGCGAGGAGGACGGATGGGGGAAGTTAGTTGCCTTGAAAAAGGGGTTCAACTTCATGCACCAAATGTGTTGTGGGCTGTTTGGTACACGGAAAGGAGAGAGATAGGATTGGGTGGTTTATAGGAATTCAGTGCCCCTGGTGAGAGTTTCCAGGTTGGTGTGGAGGGGGTTAAGGCAGTGACCAGATAGCAGCCTTTTGGCAGCAAAGCCCTCTTCCTAGGCAGAAGGAAGGATATAACTGCCCGTTTAACAATGCTTCACATGTCCCCAGGGGCCCGCCTGCAAATAGATTTCATCTTGCTTTCTCTTGTACTTTTCAAAGCTTCCTGTTTTCTCACGGTCCTTTTGGACAGTTTACACTCTCTCTCCCTCCCTCCCTCCCTCCCTCTCCCTTTGAGGAAAGGAACACCCTTCTTATTAAAGAGGAGAGAGGGAGAAGAATGTGAGGGAGGGGCGGCTGTGCAGAGGCCATTCTCTTGGGCTGGCTGCAGCTCTTTGACCTCTCCTCTCTGGATAGGAAAACATAGCTTCCTGGTGCATCTTGGCTCTGAAGCTCACCTCAGGCGGTGGTAGCCAGGTCTAGTGCTGCTTGGCCTTCTAAGCCTCTGGACTCAGCTAAGGGGCAGCTGTCATTGCTCCATCTCTTGCCCACTGACCATCTCTCTGTGGCAGTGGCTGCCTCAGGGGCTCATGGGAAACAAGCAACTTCAGGCCCTGTATTTCCGGGCAGGTGGAGGTTGGGAAGGGCACCAGGAGGCCAGAACAAGGAGGGCAAAGCAAAGAGGACATGTGCGGGCTGTTTCAAGGGCATCCTGGACATCAGAGAGACGATGGGTGGTAGGTTTTCCAAAAGCCTGTGATCTATAGTGAATCTCTGCTTTCCACTCACAAATCCTGGGGCTGGGCTTCTCTTCAGTCCCAGGTCACCTGGCAGGGGTTCAGCCAGAAGATTCCTTTCAGTTCCTTTGATGTTTGAAAAGCACAGCACCCTTGCTGGGGTGCAGTGGCTCAGATCTGGTAAGAAGGAAACTGAGTCTCCAAGCCTCCACTAGTGTCTCTCTTACTTCGATGCAGACCTTGACAGGATCCTTCAATCCAGTCGTGGCTTGGGGCTGTGCTTGCATTTTCAATTCAGGAAGTCTTGCCTTTAGCTGCTGATTTTTCCCCCCAGAGAAGACATGAGTTTTGCTGTTCCCTCTGTACTCTTGCCTCTGTCCCCAGCTGTAGGGACTCTGCTTAGAGCTGACATCCCAGGACTTTGTTGGTAGCGGATCCCGGCCTCTCTCTGTGTCCCCTGTCATGGTCTGACAGGGATGGCTCTGTGTTTCCACAGACAAAAACCAAACCAAATCAAACCTCTCTACTCTTGGGCATTGTCACGTGAGGTCACTCTTCTGGGAACTGTGAAGAAGAAAGTGTTCTGAGTGAGAGCCAGAGGACCCCGAGGGGGTCAGAGATGGAGGATGGCACTGAGTAGCTACTGCTGATATGCGAATGAGGCCCAAGTGCTTCAGGTCCTTCACATCTGACTGCAGCCTTCTGCCAGTCAGGGTCTTAGTTTACAAACTGGTGTGCGTGCAGGCGATTGGGGAAATGAGGAGAACCAGTCATGGCTGTAGTTTAAGATTTTTGGAGAGATGATGCTATTTTCCTGACCTGCTTACATATTCTCTTAGCCTAATGCTTAACTACTCCTGTTAAGCAGCCCTGAAACAGAGGTCGGTTACAAGAAAATAGAGGTGACTGTCTGGGCCTTGTTTTGGACTTCAGTCACCTATTAGAGTTGATGGGCCTCTACTGACCACTGTGGTATCTCTCCATTGTTATACCCAACAGTTATGCAGAGCAACTCTTATTATTAAAAAAAAAATTAAACTTGCCAACAGCACAGAAACTAGTTTCCTTTACCAATCAGTATGATATAATATCTCTTTTGTCATTTTGGTTTTACAAGGTAGCATTCCTCTGTGACGCTCTCCTGGAATTCATTAAGTACACCATGCTTGCATTGAATTCACAGATCTAATAATATAATCTTAAAGCCATAATGTTCCCATATACCACCAAAATGTCCCAAGAACCTTCATGTTGAGTGAATTGAGCTAGAAAATCTGTAGCAGTGAACAATTAATTCACCGGGCTCTCAGAAAGGAACCCAAGTAACCCAAGTTAGGGTTACTATTGCTGTGTTGAAATACTATAACCAAAGAACGAGGGGGAGAAAAGGTTTCGTTTTTCAGCTTATAATTCTAGATAACAGTCCATTACTGAGGGAAGTCAGGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGGATGCTGCTTACTGACTTGCTCACCATGGCTTGCCCAGCCTGCTCTATTATAGACTCCAGGGTCATCACCCCAGGGATGGCTCATCCATGATGGGCTAAGCACTCCACATCAATTCCCAACTAAGAAAATGTTGGATCTTACAGAGGCATTTTCTTAATCGAGGTTCCCCCCTTCAGATAACTCTAGCTGGTGACAAGTTGACATAAAACTAGACAGCACACCTGTCTGAGGCCGAAGAGGAACCTTGCAAGATACCCAGATACCCTGAGGTGGCCATTATGACAAACACAGAACTCTGAGGGCTGATTTATGGTGAAAGAAATTGAAGATTGATGGGTGGAACCTTGGGGTAGATGAGTTGCGGGATCTCTCCTAAACCCCAAGTCCCAGTTATAACGGGTATGGCACTATAAGCAGTTAACCCTTTTCACAACGGCAGTGGCTCACCTCAGTGTAAGGCAGACTGACGTGTCTATAAATGTTAACAAAGACAATTCACACTGTGTCGTATCAAAAGTAAAGGACATACCACACTTTCTTCAAGTAGGGGATGAACTACCTGTAAGGCGTGCATGGGCGCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATCGCATGTGTGTGTGTTTGGTCTGTGTTCATGTGGAGGCCGAAGGTCAACCTCAAAAGTCCTTCTTTAGAAGCCATCAGGTTCTCTGCCGCTGCCCCCCCCCCAAGTATTATCAGTTAGGCCAGATGTCTAGTGAACCCCAGGTACCTGCCCATCTCCACTGTCTCAGCACTAGGGTTGCAAAAGCTTATCACCACACTCAGAGTTCTATACAGGTGCTGGGAGTCCGACTTGGCTCCTCAGGCTCACACAGTAAGCACTCTACCAACTAAGCTGTTGTCCCAGGTCTATCTCTTTAATGAAGCGTCTTTCAGTTCAATCTAGAGTCTAATACCTGAGCAGCATGAGAATTACTTGAAGAGGAATGTCCCCCACCACGGAAGCCAGCTCAGAGGCCTGCTCGCTTCCCTTTCAGTGACAGCTGTCTGCATTACAGGGGAGCATCTGACCCTCTCCGTGGCTGCACTCGCTTGATGATTGAAGTCATCTGTCAGCCCTCGACTTCTTTCTCCCTACATACCTTCTGCTCTCCCACTTGGGGCTTTCTCCTCTTTAAGTTCTCCTACTGTAACATGCCCCACCTAATAATACAGGACCTGCCCTGTGTCAAGCACCACAAGGCAAATTGCAATCCAAAGGCAGGCAGAGCCTGCACAGACTCAGTCTGCGGAGTGGAAAACACATTACCGGTATAGATTCAGCACTGATCTCAGTAACGGCAATGGCAACACACCTCTAGATACCCAGGGATCACCCCGTAAAACCTGTGAGCTGTGCTTCTTTTCCTTAAAATGTTCTTGGGCTAGAAATGCCTAACATGTATCTTTAGATCTTAGGTTTTGCTCCTTAGCTATGATAGAGAAGCCGGAAAGCTAAGCTCTCACGGCTTTAAAAAGAAAACAATTTTTAGCTGTGTGCAAAACAGAGATTAGCAAGCATCTTCATGAATTGTGACTAGTGGGAATAAAGGAAATATCCATGCTACATAAGGCTTCTCTTGTGGAAGTTGGAATCGGATCAGCTTTCCCGTCCTTTCCTCCTCTTAAGCTGTCATTTTTTTGTTGTTCCTCCCCGATCCATGGTGGGATTCAAACCTAGTGCTCACACATGATGTGCAGGCACTGTACCTCTGAGCCACATTGCCAGGCTTCGAGTCACTGTCTTCTAATGTATATGGTGTACAGTTACTCTGAGCTAAGAAGAACTCTGCCTACGATCAAAAAGTCATTCGTGCTGGCAAGGAATCAGAGGTGGAAAATGTACTCAAATCCTCAAATCAGTCAGAGCCAGCCACTCACAGTCTGCGTGGATTGTTTGGGTCTGCTGTGAGGCCCCAGGATGGCCCCTAATACACCCAACAGTCTTTTGCCTTGCCTCCCAAGATCAATCTTGTCACTCTGCCCATTCCTCCAAGGTCAGCTCCTTTGTCCGTCCCTAAAGAAAACAGTGTCTTTGGTAATAGAAATTCAATCTAGAATCTTGACATTAGCCTGGAAGACCTCTGTTGGGGAGAAGGAAAGCTGATATAAGCCCCAGGGGATGCCTTACCTCACATCCTTCCTGTAGTTTCTCTCACCACAAATTGCACCCACCAGTCCCCTCAGGGACTGAGGCCAGAGAAGAATCATCTGCCACTACTGAACAGCTGGTCTAAGCACAGACACAGATTCCTGCTTTGTCTTCCTCAGTGCACAACCAAGGAAAAGCAGAAGCTCCCAAACACTGCTCTCCTGAGGCACGGGGACAAAAAATATACCACAGAGTCACCATTGTGCACTTTCTTCTGTGGAGAGGTATCAGAACCACTCTTGAGATCTATCGTGTATGCACCCACACTGGGTGGTCACAGCCGTTTGGTCACCTTCGTGCACATAGGCCCACATAGGTACACATACATAGACATAGACATACACACAGATGCATGCATTTCTAAAAGTTTGCATATATATATATATATATATATATATATATATATATATATATATATTCAGACACTTTTCTCATTTCTTTAGATCTCTACCCAGAGAAAAGATGGCTCCTTCCTTATATTTCTGTCTCTTTTTTTAAAAAAATATTTTATTTATTTAATGTATATGAGTAGCTGTCTTGAGATACACCAGGATCTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCCTATTTCTGTCTCTTTTAACTAGCTACGTAGTAAGCTTGAGGTTAGCCCGGAAGACATGAGACCTTGCCACTCAACAAAAACAGATTTTGAAATTGCAAGCTTTGCAATCTGGGCTTTGAGTTTAGAGAGTCCAGACACCTGTATCTCACAGTCCACTCTGCCTGCTCCATGTCTGACCCCCAGGTAGTGCCTGGCCCCTCCCTGCCTGTCAGGAGGACATTGTCCTTGGAAGTAGTAATAATTGCACCAAGCAGGTGTGGCCAGGGCTCTCCAGCCCCGCACCACTAGAGCATGGGTTCTCTCTGGCAAGATCACTGTGCCCCGGTCTCTGTCTCCAACAG
Seq C2 exon
CTGTGCGGGAAGGAATTCAACAGGATGCACAACCTGATGGGCCACCTGCACCTGCACTCGGACAGCAAGCCCTTCAAGTGTCTCTACTGTCCCAGTAAGTTCACGCTGAAGGGGAACCTGACCCGCCATATGAAGGTCAAGCATGGCGTGATGGAGCGAGGCCTTCACTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017249:ENSRNOT00000023180:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]