MmuINT0179096 @ mm9
Intron Retention
Gene
ENSMUSG00000050919 | Zfp366
Description
zinc finger protein 366 [Source:MGI Symbol;Acc:MGI:2178429]
Coordinates
chr13:100004052-100014043:+
Coord C1 exon
chr13:100004052-100004243
Coord A exon
chr13:100004244-100013868
Coord C2 exon
chr13:100013869-100014043
Length
9625 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTGGTCTCTGTCTCCAACAGCTG
3' ss Score
10.08
Exon sequences
Seq C1 exon
GGTGTGAAGGAACACAAATGCGGGATCTGTGGGCGTGAGTTCACCCTGCTGGCCAACATGAAGAGACACGTGCTGATCCACACCAACATCCGTGCCTACCAGTGTCATCTCTGCTACAAGAGCTTCGTGCAGAAGCAGACCCTCAAGGCTCACATGATCGTCCACTCGGATGTGAAGCCTTTCAAATGCAAG
Seq A exon
GTGGGGAGAAGGAAGGACTGGGAGGGAGTGGTATGCAAATCTCTGACAGGCAAGACCCTGGGAAACCTTCTACTAGATTTCTTCAGTAGTACGACTGAGGCTCAGAGGAGGCCTGTGGCCCAGTCCAAGTCACTCCACCACTCTGACCCTGTTTCTGCCACCCGAGCTCACAGCGGTCCTTCCCTGGTTCCTCTTCATATGACTGTGGCCTAACTGCTTAGTTCAGGGACAGGGAGTGAACAGGCAGTCATGAAAACTCTGAGTGTAGTACACTCTTTATATAATTGCTTGGAAGAAGCTAAAGGTGATGCGGGGGGCACTACTGGTCTAGAGAGGAGAAACCAGGCTGGCCCTGTTTCTCTTATAAGCCAATGAGTAGCCACAAAAAGGAATCTGAAATCTAACACATTTCCCCTGTCCTGTCTTGACATTTGGGCTAGGTCTTACAATGTGAGAGCAGACCTCTCTCAAAGAGGATTCTGGCATGCTGACTTCATTCTCTCTGGATAGAGTTTCAATGGTCAGATTGCTAGTTCTTAAGATAGTTGCAACAATATTCATGATAGCCAAACTGTGGAACCAACCTATGGGTATATCAGATGATCAGGAGAGAGACCGGGCCATATACACAAGGGAATACTATTCAGCCATAAAAGGAACAAAACCTTGGATCTATGTCAAACATGAACGGAGACCATATTGGAGGACACGATGTTAAGAGAAATAAATTAGGCACAGAGAGACAAATATTGCATGCTCTAGCTAGACATACAAGCTAAGTTGACCTCATAGAAGCAGAGCTGAGAAGAGTGGTTACTCGAGCTTGGGAAGGGGAGGAAGGAGAGGAGACAGAGGTTGGTTAGGCGCAAAGATAGAGTTAGATGGGAGGAATATGGCCTGGTTAGTGGCCCATAGTACAGCAGGGTGACTAGTTATGAAGACTTCACTGAATGTTTCCCTGAAAGAAAGATTTTGAGCATCCCCAACATCAAGACCTATGTCGTGATGGTATATTGACGACCCTGATCTGCTCACAACATGTTCTACACATGAAGCTAAATATACTATACCAAACATATATGAATCGTCACTATGTGCCAATTCAAAGCATTCTGAAAAAGCACAAAAGGATCCAAAGCTATTCCTCCAAAGGACCCCAGAAATGCTTGTGTGGAGTAAATGTGAACTGAGCCTCTTCAGTATTTCTTCCTTATAGCCGAGTACCATGTGGCCCAGGACCTAAGCCCTGCTGTTAGAAACAGCTGGATCAGGTCACTTATTACTTCGGTTTATTCTTATTTTATCTGCTTAGAGGGTGTGTGAGCTAAAGATCTTACAAGACCGCGGCTGTCCAAGACTGCCCCGCTCCGTGGCTGTTTCCAGGAGAGTTGCTTAGGCCTGCCTGGGTAGTTGGAGGACCTCAGGGGTGGGTATCAACCCAGTCAGGAAGAGAGAGCAGAGGGGGAAGAGGAAATACTGCGTTCAGACAGTGGAGTGTGTCTGTGTGAAACCTAAATTTTCCTTTTCTGCTGCTGCGTGTTGCCAGGTGTGTGGGTGACTCACTTGTAAATCCGAGTCCCTGCAATTGGATTCCCTTCTTCCAGGAGGGGCTGCCGGCTTAACCCCTCCGCATTGTGGCCCCCGCTTGAAGGAATCCCTGTGAAGTGAACTTTTTTCCTGTGTTGGCAGCTTCTCGACAGGGCGAGAGGTCAGGGACCAGAGCTTCCTAGGCCGTGTGGACATTGTCTGGAGAGGGGCCTTCTCCCCAACTCCTTTCCTGACACCCGCTTCTGCTTCCCCTCCTTCTCTCTGAGCTCTCAGTGGTTTGAAGGCCACATTGTGTCCGTCTGGAGTGTGTGAGCTGGAGGAGGAGAGAGCAGCGTGGCTGATAGGTACGTGTCAGGGCCCGGCATGGAATGGAGAGGCAAGGCCTCTTCACAGAGATGACCAGCTTCAAGGCAGAAGAAGCAGTAACTTGGACTCAGGACCCCCCTGACAAACAGGCCTGCGAGCACCCCCAACTCTCTGGACTCCACAAACACCCCTTCCCTCTCATCTCAGACACCCCTCTATTTCCCTTCTCGCCCCATCAACCCCATCAGTGGTTGACCATTGACAGCTGCTCTGCCTGCAGAGATTTACTGTCTCCTGTACTGCAGGTGCTGGCAGGGTCTCCTACACTTGCACATCAAACACAAGCTGCATTAATTATCTTACCAACTGTTGGTTGCAGTGCAATTGTTGCTCTATAAAGGGAGCTACCTCTTAGTTTATTCTCCAAAGACATACACAGCTGCTCATTCCAGCCACCTTCCATTTGTACTGTATCTATTCTGATTCCTTGGTACAAACATTGTCTTGGGGGAAACCCCTGAGGTGGAGGGGTAGGTCAGAGCAGACATAGCCTTGGGGTGGAGGAGCCCCTGAGATGGAGGTCAGGACAAAGCCAGTCTAAGCAGTCTGGGATCTTGGAGCATTCCTAGAAGAGTTCTGTTTCCCTACCTTCAAAGGCTTACAAGATATCTTGGGCCTGACAGTACATGAGCATCTAGAAAGTTCTCTATAGTACCAGGGCACAAAAGCTGCTCAGAGTAGTGTACTCTGGGCCTAATGCTTCAGTGGGCCTTCCTGGATGGATGTTTTTGGCCTCTGTTCACAGACAACTATACCCTTCTCCACCCTGATGACTGTGTGCCATACATGGTCCCAAGGGCATGGGAGAGTCAGCTGGGTGTCTCAGAAACTCCATTTTACCTTCCTTAAGGGTTTCTCAGGCTCTTGATGTCTGGCACACATCGTCTGATCCCATAAGAAAGTGAAATCCCAGCTTCTACGAGAGAGACAGTTTATCCTGAGCTCTCAGAACAGGAGCTGAACGGCTTCACTCCGAAGGCCAGAATACACCTTCACCTAGAGAGTACTGTCTGTCATAGGGAAAAGCAATTTGGAGGATAAAAGGCATTCTCATCATACTTAGCTGGCCCTTCTCCAACACTTAGACATTTCTGAAATAGCAATCCGTGTAGGTCACCTTGACTGAGCCCTTTCTTCCTGAGAGCTCCAGTGCAAGCTGTCAGGTTCTTTCTCTCCTCATTACCACTTCCCCACAGCAACACCCTTTGGGCTAGCCTGTGGTATCATCACTCTTCATCATTTCAACAGACTTCCCTGGTGTGTATGGGTTCCTTCCCGTGCCTGACAACCATAGGGTAGAGAGATTCCTAAAGCCTGAAGCCTGGTTCACATCTCTCGGAAGAGCAGGTCGATCTTGGGATGTCCTGTGGTCTTTGCTTCTTACCCATATTGAGCTGTATAGAAATCTGTCCCTGAATGACGTTTGTAGGGTATTGGAAGGGTTAGACGAGAGATGGAGGCCACTCGTTCATTGCTATGCACTTTGTAACCAATGGAGACAAATGTCTGACCAGCCACATAGTGATGGTAGGAAACAAGCTTAACCAATTACACCCAAGTTTGATAGTCATAGCAGAGATAGTTATTCTCTTCTCATGATTGACATGGTCAGCAAAAAAAAGAAAAAAAAAAAAACCAAAAAGCTAGGCTTCCAGCAGCCACTGAGACACTGCAGCCCTGAGCTAGCTCAATTGCCTTTCCCCAACAATTAGTGACAAGAAAGATTCTTTCAGCAACAGATTCTAATTTCTTAGGATTTTGGCCATTAAAATCCCCTCCTCAACATAAATCTCCCATTGCAGCATGAAATAGTTCTCAGTGGAAACAGCTGTCCCCAGGGAGCAGGAATGTCACTGGCTGTAGAATCAAGCATTAACAATAGGGTAGGATGGGAAATTAGTGGAGAGGGAAGTTTTCCATTTTCTGTTTCTTTCTTTCTTCTGTCTGTGTATATATATACCACAGAGACAGAAGAAGGGCGTATATATATATGTGTGTGCATATATATATATGACTGCCCTTCTGGACTCTTGCTATTGGCTCGACTTCTAGACTCCTTGTTCCTGGCAGCCAGCTGGAGTTTGTCTAGAGAGCCAGCCTGTAGGCTTAAGTTATGTTTCACAGATATGCTTCCCAGATTTGGCATAAGCACGCAGCTCTTGATTTGGATACTATCTCTATAGTGGCGGCACTCCATAATAGCCAAGATCCAGCTGCCGTCTTTGGAAAACCTTCCAAAAGACCAGGAAAACCAGGAAGAGCTTCCATCCAGAATTTCCGGGACAAATTCCCTTTTGAGATGGGTGAAGCCCAGAGCTGCCTAAGTTATGAGTCACCAGGTCTTCTACTGCCTTTTCTACAGCAGAGGGCTGAGCGCAGGTCCATGAGTGGGGCAGACAGATAAAGTTAGTTGCCTGGAAAAGGGGGTTCTACTTCCTGCACCAAATGGATTGTGGGCTGTTTGGTATACTGAAAGGAGGGAGATCAGACCGGGTAGTTTATAGGGACTCAGTGCCAGTGCCCATGGTGAGGGTTTTCAGGTTGGTGTGGAGGGGGTTAAGGCAGTGACCAGATAGCAGCCTTTTGGCAGCAAAGCCCTCCTCCTAGGCAGAAGGAAGGATATTGCTGTATGAACTGCCTGCTTAACAATGCCTCACATGTCCCCAGGGGCCCGCCTGCAAATAGATTTCATCTTGCTTTCTCTTGTACTTTTCAAAGCTTCCTGTTTTCTCACGGTCCTTTTGGACAGTTTACACTCTCTCTCCCTCCCTCCCTCCCTCCCTTCCTCTCCCTTTGAGGAAAGGAACACCCTTCTTATTAAAGAGGAGAGAGGGAGAGGAATGTGAGGGAAGGGCGGCCATTCTCTGGGGCTGGCTGAAGCTCTTTGACCTCTCCTCTCTGGGTAGGAAAGCATAGCTTCCTGGTGCATCTTGGCTCTGAAGCTCACCTCAGGGAGTAGCCTGGTCTAGTGCTGCTTGACCTTCTAAGCCTCTGGACTTAGCCAAGTGGCCGTTGTGATTGCTCTGTCTCTGCCCACCACTGACCTCTCTGTGGCAGCTGCTGCCTCGGGGGCTCCCGGGAAGGGAGCAACTCCAGGCCCTGTATCTCGGAGAGGAGGTGGGGAAGGGCACCAGGAGGCCAGTGCAAGGAGGCTGAAGCAAAGAGAACGCATTCCAGCTGTTTCAAGGTCATCCGGGACATCAGAGAGACAGATGCTGGGCTTTCCAAAAGCCTGTGATCTGTAGTGAATCTCCCATGAATCCCAGAGTTGGGCTTCTCTTCAGCCCCAGGTCATCGGGCAGGGGTTCAGCCAGAAGACTCCTTTCTGTTCCTTTGATGTTTGAAAAGCACAGCACCCTCACTGGGGTGCGATGGCTCACATCTGGAAAGATAGAGGCTGTATCCTCAGCCCCCTACCAGTATCTCTCTTACTTTGATGCAGATCTTGTTAGGAAGGCGATCCTTCATCCAGACCTGGCTTAGGAATGCGTTTATGTTTTCAATTCAGGAAGCCTTCCTTCAGCTACTGATTTTGTTTTTCCCAGAGAAGAAATGAGTTTGGCCGGTGGTCCCTCTGCACTCTTGCTCCTGTTCCCAGAGTTCTGCAGGAACTCTGCTTAGAGCTGACATTCCAGGACTCTGTAGATAGCAGATCCCAGTCCAGCCTCAGTTTTTCTGACCCCCCTTTATTGTCTGAGTGGGACGGCTCTGTGTTTCACAGACATCAAAACAAAACCTCTCTCTACTTGGGCATTGCCATGCGAGGACACTCTTCTGGGAACTAGAAAGACGTGAGTGTTCTGAATGAGAGCGAGAGGTCAGAGGTGGGGGGAAGACACTGAGTAGCTATTGCTGAGATGTGAATGAGGCCCGGGTGTTTCAGGTCCTTCATGGGCTGACTCCACCCTTCTGCCAGTGAGGGTTTTCTTTTACAAACTGGTGTGCGTGCAGGAGGAGAATAAGTAATGGCTATATTTTAAGATTGTTGTATAAGGTGATGCTATTTTCCTGACTTGTTACATATTCTCCCAGCCTCAGGCTTAACAACTCCTCTTAAGTAGCCGGGTCCCTGATACTGAGGTTGGTTACAGAGAAAATAGAGACGACCCTGGCATTAAAAACTGCCTGGGCCCCGTTTGGGCCTTCCAACACCTATTAAAGTTGATGTGCCTCCACTCACCATTGTGGTATCTCTCCCTTGTTACAACCAACAGGCTACCACTCTACTATAAAAAAAAAATTAAACTTGCCAACAGCACAGAAACTGGAATCAGAGCTGACCCATCATGAACTCACAGTGGACTTTCCTTCAGGCCACTGGGATTACTGTGGAGCACAATATAATAATTTTTTTTTTGGTCATTTTGGTTTTTCAAGACAGCGTTCCTTTATGAGGTCCTGGCTGTCCTGGAGTTCATTAAGTAGACCATGCTTGCCTTGAACTCATAGGTCTGACAATATAATTTAAAAGTCATAACGTTCCCATAGGCCACTAAAATGTCCCAAAAGTTTCATGTTGAGTGAATTGAGCCAGAAAATTGGTAGCAGTGAACATGCATTCACTGGGCTCTCAGAAAGGATCAAAAGGTAATTTGTCTGTCCTAGTTATGGTTACTAACGGTGATAAAACACCATAATTAAAGCCACTTGGGGAAGAAAGGGTTGATTTTTCAGCTTACAGTCCATCATGAGGGAAGGGCAGGAACCCGGAGGCAGGAGCTAATGCAGAGGACGTGGAAACGTGTTGCTTACTGACTTGCCCCCCATGGCTTGCTTTATTAGAGAATCCAGGGCCATCAGCCCAGGGACAGCACATCACATCAATCGCTGTAACTAAGAAAATGCTGGATCTTACGGAGGCATTTTCTTAATTGAGGTCCCTCCCTTCATATAACTCTAGCTGGTGACAAGTGGACATAAAACTAGACAGCACACTTGTCTGAGGCTGAAGAGGAACCTGCAAGATACTCAGAGGGGACCATCAGACAAGCACAGAACTCTGAGGGCAGGTCTGCGGTGAGGGAAGTTTGAAGGTTGAAGGTTGACGGGTGGAACCTTGGGGTGGATGAATTGCAGTCCCAAGTCCCCAAGTCCCAGGTGTGGTGGGTATGACAGCTCTAAGCAGTTGACCCTTTTCCCAATGGCAGCAGTTCGTGTAGTGTAAGGCAGATTCATGTGTCTATAAATATTAATGAAGACAATTCATACTTATGCCAAATCAAACATAAAGGGCATACCGCACATTCTTCAAGAAAGGGATGAACTATCTGCCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGTGCACGTTCACATGGAGGCCTAAGGTCAACTTCAGAAGTCATTCTTTAGAAGTCATCAGCTTCTCTGCCCCCCTCACCTAAGTGCCATGTCTAGTAAGGCTGTCTGTCTAGTAAGCTCCCAGGGACCTGCCCATCTCTACCACCTCAGCAAGAGGGTTGCAGAAGCAGTGTGTCATCACACTCAGAGATCTATGCAGGTGCTGGGGGTCCTCATGCTTGCATGGCAAGCACTTTACCAACTAAGCTCTTGCCCCAGATCTATCTCTCTAGTGAAGCATTCTTCAGGCCAATCCTGAGTCTGATACCTGAGCATCACGAGAATAACTAGAAGAGGAATGTCTCCCACCATGGAAGCCAGCACAGTGGTCTGTTTCCTTTGCTTTCAGTGATAGAGTTCTGCTTTGCGGGGGAGCATCTGACCCATCTGTGATTGCATTAGAGGGGAGCATTTGACCCTCTCTATGGCTGCATTGCTTGATGACTAAAGTCATCTTTCAGTCCTCAGCTTCTCTCCCCCTACATACCTTCTGCTCTTCCACTTGGGGCCTTTTCCTCTTTAAGTTCTTCTACTGCAATGTGTCCCACCTACTAACAGAGGACCTACCATGTGTCAGGCAAACCCAAGGCAAGGTGCAACCCAAAGGCAGGCCCAGCCCACAGAGATTACATGACCAGTGTTGATTCAGCACTGGTCTCAGCAATTGCAACAGCAACGTGCCTCTAGATACATACCCAGGGGTCACCCCACAAAACACATGAGCTGTAGTTCCTTTCTTTAAAACGTTCTTGGTCTCGCAATGCCTAATGTGGATGTTTAGATTTGAAGTTTTTTCCTCAGCTCTAATAAAGGAGCAGGAAAGCTAAGCTATCATAACTTTAAAAAGAAAACAACTTTAGACATGGGCAAAACTGAGCTCAGATTAGTGCCTTCATGAGTTCTGCCTAGTGGGAATAAAGGAAGTGTCCAGGCTACATATGGCTTTGCTTGTGGAGGTTGGAATTGGGTCAGCTTTCCCATCCTTTCTTCCTCTTAAGCTGTCCTCTTTTGTTGTTCCTCCGTGGTGGAGTTCAAACCCGGTGTGTGCACGGTCTATGCAAACACTTTACCTTTGTGCTGCATCCCCTGGCTTTGGGTCACTGTCTTCTAATGTGTATGGTGTGTACTTACTCTGACCTAAGAACTCTGCCTAGCATCGAAAATTCATTCTTGCTGGCAAGGAATCAGAGGGGAGAAATGTACTCCAAATCCTCATGCAGGTACAGAGCCAACTACTCAGAGTCTGCGCATGGATTGTTTTGGGTCTGCTGTGCAGCCCCAGGCTGGCTCCTCAGACACCCAATAGTCTTGTGCCGTGCCTCCCAAGGTCAATCTTGTCAGCTCTTGCCCGTTCATCCAAAGTTAGCTCCATTGCCCTTCCCTAAAGAGAACAGTGTCTTTGGTAATAGAAATTCAATCTAGAATCTTCAACATTAGCTTGGGAGACCTCTGTCAGTGAGAAGGGAAAGCTGATATAAGCCCCAGGAGATGCCTTACCTCACATCCTCCCTGTGGTTTCCCTCACCACACATTGCACCCACCAGTCCCCCCAGGGACTGAGGGCAGAGAAGAATGCTCTTAACACGCTGCTCTAAGCACAGACGCAGAATCCGTCTTTGTCTCCCTCACTGCAGGACCAAGGAAAAAGCTGAAGCTCCCAAATGCTGCTCTCCTGGGGCACTGGGACAAAATGGACCCCAGAGTCACCACTGTGTACTTTTCTTCTGTGGAGGAGTAGCAGATCCCCTCCTGAGATCTGTCATGTATGCACCCACACTGGGTGGCCCACAACTGCTTGGTCGTCTGCATGCACATGGGCCCACACAGGTTACACATCCATAAACTCAGACATACGCACAGATGCATACATCTCTAAAAGTCTGCTTTTATCTATATCTAAATCTACATGTTTATCCATATCTATATCTTTATATCTACATATGTCAATAGTCTCATATCTTTAGATCTCTACCCAGAGAAAAGATGGCCCCTTTCTTATATTTCTGCCTCTTTTAACTAGCTACATAGTAAGTTTGAGGTCAGCCTGGACTCTATAAGACCCTGCCACAAAAAAAAAAAAAAAGCTTTCATTTCAAGCTTTGCAATCTGGGCATTGAGATTAGAGATCCTGGACACCTGTGTCTCACAATACACCCTCCCCCCCCCTGCCCCACTTCTGACACCCAGGTAGCACCTGCGGCCCCCCCCCCCATACACACCTGTCAGGGGGACATTGTCTTTAGAAGTAGTAATAGCACCAAGCAGGTGTGGCCAGGGCTCTTCAGCCCCCTCACCACCACTAGAACACCGGTTCTCCCTGGCAATCACCGTGCCCTGGTCTCTGTCTCCAACAG
Seq C2 exon
CTGTGTGGGAAGGAATTCAACAGAATGCACAACCTGATGGGGCACCTGCACCTGCACTCGGACAGCAAGCCCTTCAAGTGTCTCTACTGCCCCAGTAAGTTCACGCTGAAGGGGAACCTGACCCGCCACATGAAGGTCAAGCACGGAGTGATGGAGCGAGGCCTGCACTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050919-Zfp366:NM_001004149:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: