GgaINT0061866 @ galGal4
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chrZ:13476431-13477272:+
Coord C1 exon
chrZ:13476431-13476532
Coord A exon
chrZ:13476533-13477127
Coord C2 exon
chrZ:13477128-13477272
Length
595 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
CTTTTCTTTTTTCTTAACAGGTG
3' ss Score
13.64
Exon sequences
Seq C1 exon
GCCACCATTTCAAAGCTCATAAAGCTGTTCTTGCTGCCTGTAGCCAGTTCTTCTACAGATTCTTCCAAGATTTCACTCAGGAGCCCTTGGTGGAGATTGAAG
Seq A exon
GTAATCTGATTCATGTAGATAACGGCTTTCAGTGTTGTTTACTGGAGCTGATAATTAATGTGGTATCCTTAATACAGGCTGACGTGCATGCTTGATGATATCAGTTAATATTTAAGGTCTCAACTCATGGGTTATTCTGAGGTAGCTGTTCCTTGATAAAAGCCATTCTGTTCATGCAGAAAAGGCTCCCAGTGATGGTTAGTGGCAGATGCCTTAGCTGGTGTGCAAGAACAGGACAAACATGGAACAATACTTCCCTTGTAGGCAGGGAGTGATTTCATGGAGCTGTCAGTATATTTCTAGTAACTTGTTGATCAGAAGTCCTTCTGAGAGAGAGATTATATTTTTCTGTATAAATGTATACATTTAATTGCTCTGTATAAAGAGCTCTTTGTTCACGTTATTTTTCCCATACTCTTATCTTTGTCATGGTGCTATTCTGTAGTTGTTTCAAATTTCCATGTTTTTGTACCAAACTTGTTATTCCAACATTCCAACTGGCATCTAAAGTATGTGAGCAAAATTCTGAGTTGGCAAGCATGCAAGATTCATGAGGTAGAGGCTTTGGTAATCTGCTTTTCTTTTTTCTTAACAG
Seq C2 exon
GTGTAAGTAACATGGCATTTCGTCACCTAATAGAATTCACCTATACAGCAAAACTAATGGTCCAAGGTGAGGAAGAAGCAAATGACGTTTGGAAAGCAGCTGAATATCTACAGATGTTAGAAGCCATCAAAGCTCTTGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
NA
C2:
PF0065126=BTB=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCATTTCAAAGCTCATAA
R:
TGATTTCAAGAGCTTTGATGGCT
Band lengths:
246-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]