MmuINT1035482 @ mm10
Intron Retention
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119782772-119788961:-
Coord C1 exon
chr13:119788860-119788961
Coord A exon
chr13:119782917-119788859
Coord C2 exon
chr13:119782772-119782916
Length
5943 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AACGTGAATCTTTTTTACAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GACACCATTTTAAGGCCCACAAGGCTGTTTTGGCTGCCTGCAGTAAGTTCTTCTACAAATTCTTCCAGGAGTTTACTCAAGAGCCTTTGGTTGAAATTGAAG
Seq A exon
GTGAGTAGTATTTTCCACAGTACTTAGCAAAATAACTGGCTGGTTTAGCAGGGCTTCCCGGGAAATAAACACCAATAGTCACTGGTAGACAACTAGACACGTTGCTTTTTATTACTTGAGAATTCTTCCAGGAGTAAGTAATAGATGCTGGTTTCTAACAAGTCTGGCCCATTGCTAAAACCAGGGTTCACTGTCATTTTCAAATCATGCATAAATGGAAACTACCATCTTTTTTTAGTGACCTTAGACTTTAAGGATGTTAGAGATGGTAGAGATATTTTAAGTTACAGGAGAGACCTCCGTACTATCAGAAGTAGTGATATACAAATGAAATGAAATGGGCTGCTATAATTGGGGAGGACTGGGGAAGATGAATTTATAAAAAAAATTAGTAGAGAAGGGGCCATCAGTTTTTAGGTATTACTTTGAAAGCAAATGATTTTTTTTTTTTAATCCCAAATGGCAGGCCAAGTGCCGGGCATTGTGCTGTGTAGTTTGTGTCTTATCTGGGGCTCATGCTAATCTTTTGAAAAGTGGAGGTACTTTGCATATGGGGATCAGGCTCCTACAGTTTATGAAACTAAGGTTTCCTAGCTAGTCAGACATTTAGTTTGTACTATTATGCTTTTATCTTTTACTACTACAGTACTAACCCCCATGTCCCATCAAATTCTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGCCAGATCTTGTTACGGATGGTTATGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCCCATCAAATTCTAAAATCAGTTAGAAGTAAAACAGAATCTTCTTTCAGGGTTTCTATGTTTTGTGTCTTTTTAAAATAGTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAATACACTGTGGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACGGGTGGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCATGACCTTCAGAAGAGCAGTGGGTGCTTTTACCCATTGAGCATTCTCACCAGCCCCTTTTGTGTCTTTTTTACTGAGTATATATTCTTTATTCTGGGTGGGTTGCTTAGAAACTTCTCTTGGAGAAAAAAATGATAACCTAGGGGAGTGAAGACGCGAGTTACAACTCTTTCATTTTGATATATTTCAGTTAGTGTATCAGCAGGTAAATTACTTTTTGATTATAGACAGCACAGGCTTCCTGGACATACAGAGGGATTGCTAGTGAGACTCTAGCTGCCTAGATAGTACTGTTTTTGCTACCAAATAAGTCAATCAGCTTAAGGCTTGTTAAGTAGCTAAAAAGTTACTTCATCTCAGTCGTGTATTTGTCTTTTCATCTAAAAGCAGGTTAATTGGCTTATAGTGATTAGTTGAAATAATGTGCATAGAAAACCTGTCACCTGGCATATTTGGTGTATTGCCAAAGTTTAATAGGTGAGAGCTATTCATCATATTGATTAGCTGTTGTGTTATGTAGTGTGCTAGATCCAAGAGCTGAAGAATTTTATGAACACAGCATTCCTTGAAGTGCTTGAAAATGTAGCAACAGTCTAAAAGAAGAATCAAAAAGATATTAGAGCCCATTAGTGTGGGTGGTGTATTGTGATGAGGACAATAAGGTTTGTGCATTTCGGGAAGGAGTTCACTATACTAGGTGAAGGTTATCAAGAAAGGGAGGGGGAGGGGGGCTATGGTGGGTACTCCTGAGCCTGTGCACAGTCCAGGCCAAAGGCCAACATCATTGTCTTCGTTGATGGCTGTCCACCTTATTCCTTTAGGCAGGGTCTCACAGTTGCTCCCAGTACTGGCTAGTTGAGCTAGCCCTGCCACTATCTTCCCAGTGCTCTAACTCCAGGCAGGTTGCTTCATCTACCCAGCGTTTGCATAGGATCTGGGGGTCTGAACTCCAGTCCGCACACCAGGACCGCGGGGAACACTGCGCTGCCTCCCCACACCTGGCATTCGGAACCAGGGCCCAGGCTAGAGTTCTTGTTGCTAATTGAGAAAGCAGCAGAAAGCAGCACTGGAGAAAGGATTTTTTTTCTTTTGTCTCTCAGCACCTCTGACATACATCCATTATAGAGAGTGGTACACATATACTAAATATCTAAATTGCAAAATAAAATGGAAAATACTTTTTCTTGTTATTTGGTGGGGTTCAGGTATAAAAAAAGTTATCAATTATCATTTAGCCTTTAATTCTGAAATTGCTGTTTTATCCCAAGGTAAAAGTAAAGTTCTGGGCATGTATTAGAACACTTGATTTTGGGTCTTAGTTTTACTGTTTAGTAAAAGACCTTGAATGATACAGCTTCTTTTTTTAAGACTGTAAGTAGTTTTGGATTATGTCATGGACATTTGGTGTAAGAGTGGGTGCTCTTATCCTTTAGAGACTGCTTTTGTTTTTGTTTTAGCATGCAGTCAACCTATCTGGGTTCAGACACCCTCTCAGCTATGCATCCAATTTGAATTTAGTTTCAAAATCTTTATAATCCTGGCAAAGTGCTAATCCCAGTTAAAATCCCATCTCTAGGGAGATGGGCAAAAAGATGGGAAATTTGAGGCTGTCCTAGGCTACAACAAGATCTCAAACACATGAACATTGTTGTACTGCTGTCAGTACAGGAACTTAGAATTGCAGCTTATTTTGAATGATGCTAAGAGGAGAAAAATAATACCAAGTACCCCCACCCACACCTTTTATTACCTTGCTTGATTCTTTAGAAATTTCTCTGGTAGATTTTTTTTCCCCTGTTTATACCTATTGCTGAGCTGTGAGATTTGGCCTTCCCTTATGTTTAAGCCAGGATATTTGGGAGGAAAAGTAGAAAGCCTTAGGACTTTGCTATTTGATTTCACTTTCCAGTCAGGTCTTTTCAGAGTCCTTGTGTATAATCAGTGGACAGGATAGGGCGGGTGTGCTAGTGCTTTCTCTGTTTCAGATGGAACTAGAATCCCCATCTGTAAAATGTGAGCAGTAACTTGGGATTTCTTGATGAAAATACCTTTGACTAGAAATACAGCCCCATCCCCCCTCTGGCTTTGAATAAAAATTGTTGCTCCTGAAGCCAGTTACATACGTGTTCAGCTTTGTGACTTGGATTTTATCCATATATTATCTTCAGGAGACATGGAGTCCCTAATTCAAAAAGAAGACTAATTTTCTAAATTCATTATTTTTCTGGTTTTGAAACTACAGTTCTAAAATTCTTTTTTTGGCAATTCTATCATGTCCAGAAAATTTCATCCCTAATTGTCAAAGGCAAGCCAGGCAAAGGACCTGTTAAGCATTAAAAACTATGGGGTTTTGTTTTTTGTTTGAAGACAGGATCTCTACATAGTCTCTGCTATCCTGAACTTACTATATAGACCAGGCTGGCCTTCCTATTGCTAGGCATGTGCTACCACACCCAGCTAAAAGTTAAGTTTTGAGTATGAATTTTTTTTTTAAATACAGACTAGAGGAATGTCAAAATAGTCCCCCCATGAGAAGACTGAGGTTAGGTGCTCTTCAGCATTTTCCTTAGGTAACATCTCAGGAATTGATTCCTCCCAACCCTTGGAATAACTCTACTAAGAGAGGAATAAAGGATTAATGAGAATGTTTAAATCCTAAAATACCAGGATTATATTTCTGTCTGTTGCCTCCTCCCTTACCTGAGAAATGACTGAAAGCTGGAGAATTGGCTGGCTAGCCTGATGTTCACAGCTCAGTAACAAACAAAAGAATGTCTGCTTCAAAACAAGGTGGAAGGAGAACAACGTAAACATTTTCCTGTCTTCTGTACTTGTATACTCTCACATACACACACATGATAGGAAACCAAATCCAATAGCATATTAATTAAAAGATCATTTACCACAACCAAGTGAGATTGTTCCTGTGATGCAAGGATACTCCTGTGCAGAACTCTGGTACGCCATGTTGACTGTTACATCTCAACACAGTAAGACTTAGGCAGAGCCTTCCATGAGTATGATGCTTACTATCACAGGCAACAAGAACATAGACACAGTAAAAGGAGCGGTGAGAACACAAGAGATGGAATGGAGGAGATAACTTAAACCAAGGATCAACGTGGAAAGGAACCCAGACAACTCTTATTTAAAAACAGAGTAAGAATTTAAATAGAAATTTCTCCAAGAAAGAAATGCAAATGACCATTAAGTATATAAAGCATGTTCCACTTAATTAAGTCAAATCTAGAAAGTATCACATACGTTTGTGAAGAAGGCTATCAAGAAAGCAGAAAACAGGTGTGGGAAGAGAAGTTGGAAATGAGTGTGGGTGCTCTGGAAAACAATCATTCCAAAAACTTAAAAGTAGAAACACCATATGTATTGAACAGCTTTCCGAGGGAGATTTGCTTTGGCTCAGAGTTAGAGGTTATGGGTAAGATGGAGAACCTTGGCACAGAGAGTGGGTGCTGAAGCAGAGGCCTTTGGCATAAGCAAGAAGGACCTTCCTCTCACTAGCCCTTCTTTAAAATCAATTCAATAAATATTGAGCCCTTACTCTGTAACTTAAGCCTTTTTAGTATATAAATGTTTCCTGTTCATGAATGAGTTTATAATATTCTCATAGAAGCACACTATGGAGAATGGTGCTTATTGAAGAACAATCCAGTATCTTCTGTAGACAGACAAAAGCTTCACAAGACTGCAGGACAGAATAACTTAAGCCCCATCTCTCTAATATCCCATCCATCTTTGCACAAGCATCCTCAGGATCCAGTCTTGAGTAGCATCGCCTGCTGGGGTCCAAGCTGAGCCTTTGGGAGGGATATTTCGTCTTTAAGCCATAGTGTACAGAATCTGGTAATTCCACAATTGAGCACCCATGGAAAAGAATTGGACTCCTTGGCCAACAGGATGCCTCAGTGAACAACAGCATTTAGTGTGAGCCTGATAACCTGAGTTCAGTTCCTGGAACCCACCGCTGACCTCTACAGGCACATGACACACGTGTCCATGTATCATGCACACTCAGTAATGCACTGAAGGCTGTCTTTATTGCATGTCCACATTCTTTTCAGCACCATTCGTGGTAGCCAACATGTGGAAATGACCTAAGTGTTCATCAGCAGACTAAGAATGATGGAAATTTATGCATATACAAAATAGAACACTGGCCTTTAAAATTTTTGCTATATGCAACAATGTGTATAAACCTTGAAAATGTTAAAGTAAGCTAGTTAAAGATAAATAATAAAACTATCCTGTTACATAACCATCTGAAATTGTCAGATTTATAGTTAAGGGGTGGGGGTTGGAGAAGTGGCTCAGCAGTTAAGAGAATATTGCTTTTCCAGAGAACCCCAGTTCAAATCCCATCTCCTACATCAGGCAGCTCACAACCACCTGATATTCTAGCTCCAGGAAGTTGGCATATACACATAATCTGAATTAACTTAAACCTTAAGGGAGTGAGAGTTGGAGTGGGCTTATCAGGCCACAAAGAAGAGCATGAGATCGTAGCTTGGTAAGTAGTACCGAAATGTGACTAGGATACTGTGATAAGAATTCTTGATATTTTCAAAAATGAGAAGAAATGACCAAATCCCAAGTACTTTCTTTACATTCTGAAGTTTCTTTTTTGTTTTTTGTTTTTGTTTTTTTTTTTTGTTTTTTCGAGACAGGATTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGGCTCCGGAGTGCTGGGATTAAAAGTGTGCACCAACACGCCCGGCTCTGAAGTTTGAATTGGTGTGAACTAATGGTAACGTGAATCTTTTTTACAG
Seq C2 exon
GTGTTAGTAAAATGGCTTTTCGCCACTTAATTGAGTTCACATACACAGCAAAACTAATGATACAAGGGGAAGAAGAAGCCAATGATGTGTGGAAAGCAGCAGAGTTTCTACAAATGCTGGAAGCTATTAAAGCACTTGAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870:ENSMUST00000177916:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
NA
C2:
PF0065126=BTB=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types