GgaINT0062457 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55647616-55649148:-
Coord C1 exon
chrZ:55649145-55649148
Coord A exon
chrZ:55648371-55649144
Coord C2 exon
chrZ:55647616-55648370
Length
774 bp
Sequences
Splice sites
5' ss Seq
AAAAAAAGA
5' ss Score
-9.45
3' ss Seq
CCTTTCTTCCTTTACTTCAGATT
3' ss Score
10.41
Exon sequences
Seq C1 exon
AAAA
Seq A exon
AAAAGAAGCACAACTGATGTAGCTATAAATGTCCCTGTTCATTGCAGGGGAGGTAGACAAGTTGACCTTTAAAGGTCCCTTGCAATTCAAACGATTCTATCATTTGTCAGAAAAACAATGTCAGTATGTTTTCCTTTTCACCTCCTTTATGTGGTGAAACTACAATGAAATTTGGACAGTATTACATACCAGCTGCTTCTGTAGAAAGCAAACAATACAGCAGTTCTGTCCTTGCTTTGGTTTACTTTTGAATCATTGTACTTCATCACCAAGTGCTGAGCTTGCCTTTCTTAGAAGCCAGGATTGATTTAAATAGTTCTATCACAAGTTTCAGTGAATTCCTATTCAGTGCTGTGTTGTGTCCATTCTGTTTCTGCAATATTACTCACTGAAGGTGATCATAAGAACAAGACTGTGCCTCTCTTACAGTCATAACTTCAATACTAAACATATGTCTCTTCTTTACATGGACTTTTTTCACGCGTGAAGTTAAATAGATTCTGAAAGGAGACTGAAATCTGAGCCCCCTCTACAGACTTGATGCTATAACTTTAATTATCCTGTTAAGCCTGTGAGAGAAGCCTTTAAGATTTACAGGGTGTGTTATATGAAATCAAGCAGTTCTCCCAGCTGGAAAGGATTTTCAATGGCTTCTTTTACTGCTAGAGTTTGAGAAATGCAGAAGCTGTTACTAAGCAATGATTATTCTTCTCTCAGTACAGATGAATATCTGTTTCTTTCCTGCTCTAAATTTCCTTTCTTCCTTTACTTCAG
Seq C2 exon
ATTGAGCAGGTTAGCTTGGAAAGCCTGGACATGGATAGTCCTTTGAAGATGAGAGTCAACATTTCAAGGCTTGACAACAAGGAGCACATCCTAGAACTCATGCCAGCCATTGAGCCTCTTACCAACCATGTGCGCTACATCATCTCACATGGCAACGATGACGGCGTTTTTCGAATCCATCAGCGGGATGGACTCAGTTATTTGCACACAGCTAAGAAAAAGTCAGTGCCTGGAACATACACACTGGAAATCACTAGCATTCCTCTATATAAGAAAAAGGAGCTAAAGAAGCTGGAAGACAGCAATGAGGACAGCTACCTCCTTGGAGAGCTCGGGGAAGCTCTCAGAATGAGGTTGTGGCTAGAACTCTACTAGCCATCTTCCAGACTGAGTCCAGTTCTTCAGTCACTTCTGTTCACCTATTTACCCACCTATTTACGTTACACCCGAACGTATCTGCTTTTCAAAGGTTTTGGAACAGTCACTGACTTTTGGGGGATGAAGGGAGAAGGGAAGACTTCTCTCTATTCTATGGAGACTGCAGAACCACCCTTGCAAGAGGGGCAACTTGTGGCAATCATGATTACTGTATCTTTTATATAACCTCAATTTAAAAGTATATTAAAAAGCTAAAGTTTGAGAGATCATCATATGGCACTAGATGGCACAAAAAATGTGAGCTATTTTTTTCCTGTTAGCAGTCTGTAACACTTCGGGTATTTTGCTATAGTTCCTAATTAAAAAATATAGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]