BtaINT0061152 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26916276-26917267:+
Coord C1 exon
chr7:26916276-26916293
Coord A exon
chr7:26916294-26916661
Coord C2 exon
chr7:26916662-26917267
Length
368 bp
Sequences
Splice sites
5' ss Seq
AAGCAGAGT
5' ss Score
-5.98
3' ss Seq
TTTTCCTGCTCTTCTTCCAGGTT
3' ss Score
12.7
Exon sequences
Seq C1 exon
AGTGAAGATCCCTCTAAG
Seq A exon
CAGAGTTAAAACAGCTGCACTTCTCATTTTAACTCCAACAACAAAAAAATTACCATTGTTTCCTAAATTGTCTCTTGTTTATTAATAAGTATGATATTTCATAAACCCCCCAAAAAAACTTGAAATATGAGTGCCCCCCATCAGCTCAGCCCTGTAACTTTACCTGGACAAGGTGTGGGAACAGTCCTAAAGATTTACAGGGCACACTCGGCGGAAGTGACCTTTTCTCCCAGCTGAGGGTAAGTTGCAAGCAGACAGGCAGAGACAGTATGTCACTGTGGCTGCATCCCTCTGATAGCCGGTTCCTGTAAGTCCTCGGTTTGTGCTGTCAAAGCTCTTCCCACACGGTTTTCCTGCTCTTCTTCCAG
Seq C2 exon
GTTAAACAGATCAGCCTGGAGAGCGTCGACATGGACAGCCCGGTGATGATGAAGTTTAACGTCTCCGGCCTTGGTGCGAAGGAGCACATCGTAGAATTCATGCCGGCCATCGAGCCGCTCAACAACCACATCCGCTATGTCATCTCCCAGGGGAATGACGATGGCGTCTTCCGCATCCACCAAAGGAATGGGCTCAGCTACTTGCACACAGCCAAGAGGAAGCTCGTGCCTGGCATGTACACACTGGAAATCACTAGCGTCCCTCTCTACAAGAAAAAGGAGCTTAAGAAACTGGAAGACAGCAATGAAGATGACTACCTCCTAGGGGAGCTGGGGGAGGCTCTCAGAATGAGGCTGCAGATTCAACTCTATTAACCCCTTGCAGACTTGGTTCCAGGCTCAAATCCCTGCACAGCCAGCCTTCAGAAGCCTCTGAGAAATCAATGACTAGTTTTAAAGAGGAAAGAAAAAAAAGACTTTTGTTTCTTTCCTCCCTGTCTCAGACTTCAGAATGTTGACCCTCACAGGGAGGGATAATGTAGACTCTGGTGTGGCCAAAGATTTGAGTACAAAGGCAACCGTGGTTACTGTATTTTTTATATAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:99
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002812=Cadherin=WD(100=44.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]