DreINT0010659 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4071519-4073747:-
Coord C1 exon
chr22:4073588-4073747
Coord A exon
chr22:4071894-4073587
Coord C2 exon
chr22:4071519-4071893
Length
1694 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATATTTTCTCCCGCCCTCAGGAG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GCACTGCATCAATGGGGTGGGCTTCCAGGGTCAGTTTGGCTCGGAGGGAGGAGACGATGAAGAGTCGCTGTCACCTGAGGCCTGCTACGAGTGCAAGATCAACGGTGACCTGGGAAAGAAAGGCCGTCACAGGCGTAATGCTGATGATAATGAGCTCAAG
Seq A exon
GTAATTTTCACTATGCCCAAATGTAGACCGCTAACCCTGACCTTAACCCCTAACCCTAAATAAAACATATAAAGAAGTCATGTTGATACTTGCACCAAAGAATGGAATTTGTCGCACACATGTAAACGCCCAAGATCTGATTTTTTCATATCAACAAAGAGCTACCTTTCTAATATGGATTTTAATCGGATACATTTTAGATATGCATCTAAAACGCATCCAATTCACTTTGATTTGACTTTTTTGATTAATGTGTTACAACTTATTTTTTTACACAATGGGCTGTCCTTATAACATAGGAGTTCCTGGAGGGGCGGTGTCCTGGGGCCTCATGTACGAAGACTTGCCTGGAAATCTTACTAAAACATTGCGTACGCACAAAGCTGTAAATGTGCGTACGCAGAAAAAAATTCAGATGTATGAAACACTGCGTACGCCGAATCCCACGCATATTCTTTTGTACATCCAAATGAACGTGAAACTGAGCGCAACATGCACGAGCACAAAACCCCTCCCTGCCTCCTCCCCCGTATGAATATGCTAATGACTCTACTTTGGCAAAACCCAACGAAAAAGCAACGGCAAAAGCAAGCAAGAGAAACTTTGAACAGAATGTGAATTGGAGGTGCTGCTTTCGGAGGTAGACTGGAGAAAAGCGGTGTTATTTGCAAGTTTGTCCTCCGGAATTAAAAAAAATAAATAGAGTGGGGAGAGTTTAGCTGATGCGGGTAACACAGTTGGGTCTGAATATCGCACTGAGTGAATTAAAAAAGAAATAGTGTGATTTATAGGTGTAAAATGTTGCAGTACCCTTAACAGTCTCAGTGGCGCAGCTCGTAAGACGCAAGTCAACATGTTTTGACACGTTCGAGCATGAACTCGGTTCGAATCCAGCGTCTGATGAACTTTCTTTTTTCCCCCCGCTACATATCAGATTTTGCCAACTAATTATCACAAGAAAGACAAGTAGGAATCAATAATAAGTTTGTGCATCATATTTTATTTCCAAATTTATTGATTGGAAATGTTTCTGATTCACGCATGCAAATTCATCTTCAGATAGTGTCTTTATAGCAATGTGCGTGCAGTAGATAGCTCAGATTACATTGGGAAAACAGGCGACCGCAGCAAATTGCGCTTTAATGTTTAGCTGGTCAACTGTACGGTATGGAAACCTTATATACCTGCTAGATAACACAACTGCCTCTAGGAGTCGCCACTGGAAATAAAACAGAAACACACAAAAAATGTGCGTACGCCAGCCATAAAGCTGGCATGGAGCTGCGCACATTCCCACGTTCAGTTCATTTTTAGTAAATCCAAACATGAGCGATTCTGAGCGTGAAACCTGGCGTATGAAAAGTTTTTGTGCGTACGCAGCGTTGATACATGAGGCCCCTGGAGTTTAGCTCCAACCCTAAATCAGACACACCTAAACAAGCTAATAAAGCTCTTACTACGTATACTAGAAACTTCCAGGCAGGTGTGTTGAAGCGAGTTGGAGCTACGATCAGCAGCCCTCCAGGACCGACTTCAGACATTCCTGCTGTAAACAATTTCTTGAAGTCAGAACTTGACTTTAGATGGACATTTTTCCCAACATCAGTTCATTTGACCCAATTGTCGGCCCATTTTTAAATGTCAAAAGTCAACTACCTTTTATAACATTTTGAAATATTTTCTCCCGCCCTCAG
Seq C2 exon
GAGACGGTGAGCATGGCCAGCATGGACATCCAGACCTCCATCCCCATGAACTTGAGTCTGGCGAAGCTCCTAAACAAGGAACCACTTCTTGAGTTGCTTCCAGCCCTGGAGCCGCTCGAGCACCACGTGCGCTACGTCATAACGCACGGAAACCAGGGCGAACACTTCCGCATCCTGGAGCGCCGTGACGGGAAGAGTGTGCTGCGCCTGGGCCGGAGGCCACCAGCTCCAGGTTTGTACCGGCTGGAGATCGCCAGCCTGCGTCTGTTCGGTCCGCGCAAACTTCAGCAAATGGAGGACCAGCACGACAGCGACTACTTGCTAGGGGAAATCGGCGACGCACTGCGCATCAAGCTGCACATCCACCTGCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(7.5=5.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGTCGCTGTCACCTGA
R:
CGATCTCCAGCCGGTACAAAC
Band lengths:
356-2050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]