GgaINT1030795 @ galGal4
Intron Retention
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56586636-56591625:-
Coord C1 exon
chrZ:56591466-56591625
Coord A exon
chrZ:56588959-56591465
Coord C2 exon
chrZ:56586636-56588958
Length
2507 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
CCTTTCTTCCTTTACTTCAGATT
3' ss Score
10.41
Exon sequences
Seq C1 exon
CCACTGTGTCTCAGGGATGGGATTTAACAAAGGCCAGTACGTGCCAGTGGATGAAGATGCTGATGAAGAAAATGCTTTATCCCCTGAAGCCTGTTACGAGTGCAAAATCAATGGCTATCCAAAAAAAGACAACAGAAGGAAGAGAAGTCTTAATGAAACT
Seq A exon
GTACGTATCAGGAAAACTAAATACTATTAACAGTTTTAATGCAAGGTATCTTCAGAGATTGTCAGTAAGCGGAAGAAATTTTATTACAGGCCCCATTCAGTGGAAAAAAATCCGTTTTTCCCCACTTGCTTCGTAATTTTCACACTTTTTTCCTATTGGCAGGATTGTTTTAGCAGTCAGAAAGACTCCAACAGCTATCAACAGCTGAAGTTTTTAAAGCTTTTCTAGTCTGAGATGTGGTCTAGTTCCTCAAAATATCTCAAATTCAGTTTTCCTGTAATTACAGAGAGCTGGGACAGTAGTCATTTCTGCAGTCTGCAGTTTGTTCTGCTGTCAGGACAGCATCCTGCAGTCTTGGACAGCTATATGTATCTTCTTGCAGATGGCTAAAGTCTCAGTAACTTTTCCTGATAGGTTATAGTTGTGGTGGATTAGAGTCCATGGCCTAGCTGATGAGGACCTCGCTTAATTCCTACATTTGCAAAATTGCTGAGGGTTTTAGAAAATTACACTTTCAATTTAATTACACTTTCTTCTTACTTTTCATGGGCTTATAAACCTAAGTTATGGAATACTCATAAAAGGCAAGCCCCAATACGCCATTTAGATACTTTTATGTTTGTTTTAAGTTAAACAAAAGTATACTTTTACATCTGCCACTTGCTCTTCTGTAAGATAGGATGTTGTCTTACATTGTTGGCTCCTGTCTTGGAATCTGCAGTAGGTAATGGGAAAATGACTTACTGGGGGAGAGATTTCCTTCAGGAGTTCAAGAGCCGCCTAATGCAAACAGGCAAAATGCAAACACCCAAGTAAAATAGTGAGGTGTGCTGAACACACAAGTTATACTGAAAGAATGAGTAAACAAGCCTTCTTTCTAAAAGAGTAGGGACTTAAAATAATCCAGAAGCTACCATCTCAGTACACATTGTTTTGCATGATCGTTGCCATCAAAGACAGTTCTGATGTTGGCTTTCTAAAAAAAGACACCAGTCATATAATTTTTTCTCTAAAAATTATAATGTTGACACTTTAAATGATTGATTTTCCCATGCAAACCCAAACTTCACACAAATATCACTTGCCGTTTCCACCCCCACTCCTATATTCCAATCCAAATTCTGTTGTCAACCCATCACAGAAACACCTGGTGGTTTTGAAAAAAGCTTTTTCTGTTGCATAGTTAATTTCATATCCAGTTCTGAATTATTACATCTACTTACTGCTGTTTGATAGCACTAAGATTTCCTACTGCCTCAGTAGTGAGATACGGAGATTTTACATCGTAAAACTACAAGGGAAAAATAATTCATAACTATTCATAATCATATCATTATTATGTGTGTGAAGTATGGTATTTAATACACTTCTGTACTTGCTCCTACTCACAAATTTTACTTGTTTTTGCTATGTGTTTTTAATTATATTACGAAGTAGCTCACATATGTATGCACATGTGATTGGAATTCCCTCAGAGAGAAGGAAGAATCCTTTCCCATCTTTAAATGTGCAAAAGTATTCTTGACAGCTAGGCTGGATATTCACTTATTATCAAGTTTCCCAAAGAAGACTAAGGCCTATGTATTTTTGGAGAAGTACTTTTAAAAGCTGTTCTTTCATGGATGGCTTTTGCACTTGTTCTTAACCTCCCAGTCCCAAATTTATTCCCAACTAACGCTTCTGGAATGGATTTACATGGCAGCAGAGACATACTTAAGCTTTTTTTTAAAAAAAAAAGAAGCACAACTGATGTAGCTATAAATGTCCCTGTTCATTGCAGGGGAGGTAGACAAGTTGACCTTTAAAGGTCCCTTGCAATTCAAACGATTCTATCATTTGTCAGAAAAACAATGTCAGTATGTTTTCCTTTTCACCTCCTTTATGTGGTGAAACTACAATGAAATTTGGACAGTATTACATACCAGCTGCTTCTGTAGAAAGCAAACAATACAGCAGTTCTGTCCTTGCTTTGGTTTACTTTTGAATCATTGTACTTCATCACCAAGTGCTGAGCTTGCCTTTCTTAGAAGCCAGGATTGATTTAAATAGTTCTATCACAAGTTTCAGTGAATTCCTATTCAGTGCTGTGTTGTGTCCATTCTGTTTCTGCAATATTACTCACTGAAGGTGATCATAAGAACAAGACTGTGCCTCTCTTACAGTCATAACTTCAATACTAAACATATGTCTCTTCTTTACATGGACTTTTTTCACGCGTGAAGTTAAATAGATTCTGAAAGGAGACTGAAATCTGAGCCCCCTCTACAGACTTGATGCTATAACTTTAATTATCCTGTTAAGCCTGTGAGAGAAGCCTTTAAGATTTACAGGGTGTGTTATATGAAATCAAGCAGTTCTCCCAGCTGGAAAGGATTTTCAATGGCTTCTTTTACTGCTAGAGTTTGAGAAATGCAGAAGCTGTTACTAAGCAATGATTATTCTTCTCTCAGTACAGATGAATATCTGTTTCTTTCCTGCTCTAAATTTCCTTTCTTCCTTTACTTCAG
Seq C2 exon
ATTGAGCAGGTTAGCTTGGAAAGCCTGGACATGGATAGTCCTTTGAAGATGAGAGTCAACATTTCAAGGCTTGACAACAAGGAGCACATCCTAGAACTCATGCCAGCCATTGAGCCTCTTACCAACCATGTGCGCTACATCATCTCACATGGCAACGATGACGGCGTTTTTCGAATCCATCAGCGGGATGGACTCAGTTATTTGCACACAGCTAAGAAAAAGTCAGTGCCTGGAACATACACACTGGAAATCACTAGCATTCCTCTATATAAGAAAAAGGAGCTAAAGAAGCTGGAAGACAGCAATGAGGACAGCTACCTCCTTGGAGAGCTCGGGGAAGCTCTCAGAATGAGGTTGTGGCTAGAACTCTACTAGCCATCTTCCAGACTGAGTCCAGTTCTTCAGTCACTTCTGTTCACCTATTTACCCACCTATTTACGTTACACCCGAACGTATCTGCTTTTCAAAGGTTTTGGAACAGTCACTGACTTTTGGGGGATGAAGGGAGAAGGGAAGACTTCTCTCTATTCTATGGAGACTGCAGAACCACCCTTGCAAGAGGGGCAACTTGTGGCAATCATGATTACTGTATCTTTTATATAACCTCAATTTAAAAGTATATTAAAAAGCTAAAGTTTGAGAGATCATCATATGGCACTAGATGGCACAAAAAATGTGAGCTATTTTTTTCCTGTTAGCAGTCTGTAACACTTCGGGTATTTTGCTATAGTTCCTAATTAAAAAATATAGATGTTTATTTATTTTTAATGCAGTAATATATGGAGAAAATAACAAATTATGTAAACAAAAAGGGAAACGTGCTTGTTTTTCTTTAGATTTATAAATTTGAGCTATAACATTTTAGTGGTACTTTCTTTAAAAAAAAAAAAAAAAGATCTGAAAGATGTTTCCTTTTGTATTTGTGCCAGTCATTCAAATAGTATATAAGTAATTCTAAAATTTATCAGAGCTGAAAGAGCACTGTGATACATCTTCCAGCTATTCTAAAGTGCTCCTGCAAAACTTTGAGCGTTCAAAGGAAAAAAGTCTTAAAGGACATGAATTGCAATACTAGTCTCAGCAGAGATCATATTTCACAGCAGGTCAATAGGATTGTATTTCTGAATCAACCACATCAGATAAAGTAAGAGGCACAACCACTGTAGCAAAATACCTTGACTGCTTTTAATACCATTAGAATGCAGAACCAAACTGTACTGTACTTCCTTCCAATAACCTCAAGGAACCACACATGCTAACACACCTCATTCTCACAAAAGGTGCTCTACATACTTGCATTACTGTAGGCAGCTGAAGAAAACATCACTCTGAAAAGGACACATGATGTTTCATACTGTTTGGTGCTGGCTTGAGTTAATGGTGCATTTACTAAAAACTGAGAACTGTATCAGGACTGCCATACGTGCAAACTATTTATGCAGTGCAGACAAGGAAAATGTGTATTTGAAATCCATTTGTTAGAAGTTTCATTAATACTGTAGTTATACACCGTACGCCTCATTTTATCATAGCTTATTTTGTAAGAACGATGTGTGTACAATGAGTTGACATTTAGTTTGCTTTAGTAATTTTTTTAAAAAATGTTTTACCATTACGTGTTAAGTGTATGTCTCTATGGTGCTTTTTTTACAGCTGGTGCTTGTAACCAGTTGTGTAACAGAATCTCATATGTGAAAAAGCCAAAGCACACGCTGACTCCAGGATTGTTTCAGTCACATATCGGTGCTGACCAAAGATTGCTATCAAGTTATACTCAGTGGTTTTTCTTTTCTTTTGTTCTCTATGGGGATTTTTGAAAAAACAAAAGAAAACATTGTACATTTTTATTAAAATGTTTGTAAGAAAAAAAAAGTTTTGTTTGTAGGTTTGTATGACAACACTTTTCTTGCAATAAAGCTTATTTTCGGGTAGTTTGGGGTTTTTTTAAATGTTGATGTTCTTTACAATAAAGAAGCATCTAATTGTAAACTTGAAGGACTGAAGAGGTAGAAAAGAGAGTTGTTGTGGTGCAAATGCTTTTTCACTTAAAAATAAAGTTATACAGCACTTAGGAATAAGGTTATACAGCATTTGCTGACTGAGTTCCTCTATCAGCACAGAACCTAAACATAGGAACTAAATCTTCCCTATGCAATTAGGATTCTGCATTGAGTATCTCAAAAACAGTTCATCATATAGCAGGATCAAGGAGGCTGGCCCTGCAAAGATTACGCCTATCGATGTCATGGACCAGCTCAATTTAAATTTGACAGTTCAGTTCTAATAAACTCCCAATGCATTCAAGAGTCTAAATCCCTCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(5.1=3.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]