RnoINT0059655 @ rn6
Intron Retention
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53068495-53070589:-
Coord C1 exon
chr18:53070412-53070589
Coord A exon
chr18:53068905-53070411
Coord C2 exon
chr18:53068495-53068904
Length
1507 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GTTCCTGCTCTTTCCCTCAGGAG
3' ss Score
10.3
Exon sequences
Seq C1 exon
CCACTGTGTCTCGGGAATGGGCTTCAACAAAGGACAGTACCTGTCAGTGGATTCGGAGGCAGAGGACGACGAAAACGCTCTGTCCCCAGAAGCATGCTACGAGTGCAAAATCAACGGCTACGCCAAGAAAGATGGCCGGCGGAAGAGGAGCGCGCCAGAGCCTGAGCCCGCCTCAGCA
Seq A exon
GTGAGTAGATGCATGCGGAGCAGAAGCCCTGCTTTGCCAAAAGAAAAAGAAAAAGGGGGGAGGTTATTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACGTGTATTCCTCGGCCCTTCCCACTGAACATCTTTGCTCCTAGGATGTGTGCACCTAACCTCTCCCTCAGCTCCTTCACCTGTAGAACGAGGATTGAAAACTCTCAGCCTCTGAATGTAGCTGAGCCTGTGCAGTGCTTGCAGCAGTGCCTGGTGTGCCCATCAGTGATTAATACCCACACACAGGCATGTTGGTGATTTCCCCTGAGGCCAGGGACAGTATGATGTCACCAGTCACCTCTCCTTTTAGTTAATATTGCTGAGAATTGCCCCCATCAACACGCACACACTAACTGGCTGTGCTTCAGAATTCTGGGTCTCAGAACCTCTCCTTATCTGTAGGACCATACTAAGCCCCCAAAATCTCTGATACTATTTTAAAATAACAAGTCAATGTTACATTTATTTTTAAGTAGATGTAAGTATCTGATCCATTGTCTAATCATGACAAATTGTTCATCAAGATATAAAGCCTTCTCACTGTGGTACACAGAGCACAATTCTGTGTAAATAATGGCGGGTTCCTCAAAGCCTCTGTAACCATAACATCACTAAAGCACAAACCCACACCAAAGCATCATGGGGTTTTCATGTCCTAACTCAAGCGGCATTCTTACCTCCCATCCCAAGTGACAAATTCGGTCCATATTATCTGGGCCCTGCTTTTTACCACTCCTGGCTCCTCTGCAGATGACTCCGTGTGTACTGAGGCCCCTAGTAAATTCAGAACCCAGAGATGATTTCCCTAGGTGCGGGCCTGCTGTCGCATAGCAATAAGACTTCTCATTTTGACCCCACGAAAGATAAAATTAGACTCGTCTCTTGTCCTCATCCATTAAAGTGTTTACTTGAGAATTTCACACATGTATAAAATGTATTATATCATATTGACCCCCATTTCTCCCCTCCAACCCCTCCCCCCGCAACACAGCAATGTCCTACTGGATACAATTAGTGCTACTCACATACACAGCGTGTATGGGGACAGCCACTGAAACGTGGGCAAACCACTAATGACCATGACACCGAAGAATATTGTCTCTCAACTTAAAACCTAATCTTAAGCATAATGTTGTATAAACCCTTCAAAGGAATCTGACCTGTGACTCTTGTCTGTGACCTAAGTCCTACAACTTTACCGATCTTGTTGAGGTTCAGTGAGAGTCAGGAAGATATACAGGGCATCCTCTGCAGAATGAATGAAGCTTTTCCCTGCCCTTGACAGGAATTGGCAGACAGCAAATGGTCAGACAGGGAACGGCCTCAACATGCCCCTGTGACCTCACTCGTGAGCCACAGATGACCTCTGAGTCTACCTTGTGCCCTGTACTAACTCAAGCATGTTCCTGCTCTTTCCCTCAG
Seq C2 exon
GAGGAGCAAATCAGCCTAGAAAGCGTTGCCATGGACAGCCCAGTCAACATGAAGTTCAACCTCTCCGGCCTCGGCTCCAAGGAGCACATCCTAGAACTGGTCCCCGCCATTGAGCCCCTCAACAACCACATCCGTTACGTCATCTCCCAAGGGAATGACGATGGTGTCTTCCGAATCCATCAAAGGAATGGGCTCAGCTACCTGCACACAGCCAAGAAGAAGCTCACTCCCGGCACATACACACTGGAAATCACCAGCGTCCCTCTTTATGGGAAGAAGGAGCTTAGGAAATTGGAGGAACGCAATGAGGATAGCTACCTCCTGGGGGTGCTGGGGGAGGCTCTCAGAATGAGGTTGCAGATTCAGCTGTATTAGCCCTTTGCAGACTTGGGTCCCAGCTCAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219:ENSRNOT00000066548:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(5.1=3.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCATGCTACGAGTGCA
R:
TTTCCAGTGTGTATGTGCCGG
Band lengths:
342-1849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]