MmuINT0062982 @ mm10
Intron Retention
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58008623-58012391:-
Coord C1 exon
chr18:58012214-58012391
Coord A exon
chr18:58010633-58012213
Coord C2 exon
chr18:58008623-58010632
Length
1581 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
GTTCTTGCTCTTTCCCTCAGGAG
3' ss Score
9.9
Exon sequences
Seq C1 exon
CCACTGTGTCTCGGGAATGGGCTTCAACAAAGGACAGTACCTGTCGGTGGATGCGGAGGCAGAGGATGACGAAAACGCTCTGTCCCCAGAAGCATGCTACGAGTGCAAAATCAATGGCTACACCAAGAAAGATGGCCGACGGAAGAGGAGCGCGCAGGAGCCTGAGCCCGCCTCAGCC
Seq A exon
GTGAGTAGACACAGAGCAGAAGCCCTGCTTTGCCAAAGAAAAGGGAGGAAAGAAAAAAAGGTTACACACACACACACACACACACACACGTGTTCCTTGGCCCTGCCCACTGATTGTCTCTGTCTCCCTAGGACATGTGCACCTAACCTCTCCCTCAGCTCCTTCACCTATAAAATGAGGATTAAAACTCTCAACCTCTGAATGTTGCTGAACAGGAGCATGTGAAGTGCTTGCCTCGATGCCTGAAGTGCACACCAGTGATTAATAACCCACATACAGGCATCACATAGGCATATAGGCGTGTTGGTGATTTCCCCTGAGACCAGGGACACTATGAGGCCACCACTTACCTCTCTTTTTAGTTACTATTACTGAGAATTGCTCCTATCAATACACACACACACACACACACACACACACACACACACACACACAAACTGGCTGTGCTTCAGTATTCTGGGTCTCAGGACCCTTTCTTATCTATAGGACCACACTAACTTAGCCCCAAAATCTCTGATACTATTTTAAAATTACAAGTCAATGTTACATGTGTTTTTAAGTAGACTGAAGTATCCAACCCGATATTTAATCATGACAAATCGCTCATCAAGTCTTCCCGTTGTGGTTCACAGAACACGATTCTGTGTAAATAATGATGGGTTCCTCAAAGCTTCTGTAACCATAACCTCACTTAAGCACAAACCCATAGCAAAACATTATGGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTGTCTCACTAAGGCAGCAGTCTTACCTCACATCCCAAATGACAAATTCGGTTCATATTGTCTGGGCCCTGCTTTTAACCAATCCTGGCTCACTCTGCAGATGGCTCCGAGCCTTCTGAGTAAGAAGGCTCCTAGAAAAGTCACAGCCCAGAGATGGTTTCCCTGGGGGCAGGCTCTGCTGTTGAATAGCAATAAGACTTCTCGTTTTGACCCCACAAAAGAGAAAATTAGACTCGTTTCTTAAATTGTCCTTTTCCATTAAAATGTTTGAGAATTTCATGCATGTATAAAATTATTATCATATTGATCCCCATTTCTCCCCCTCGACTCCCTGAAGAGAGCCCCCCCACAATACAACATTAGTCATTGTCCCACTGGATACAATTAGTGGTACACATATACACACTGTGTATGGGAATATCTACTGAAACAAAGACAAACTACCAGTGGCCACAACACCAAAGAGAAGTGACTATCTCTCAACTTTAAAGTTAATCTTAATATTGTATAAATATTACTAAATTGTATAAACCCATCAAAGGACCCTGATATGTGACTATTGTCTGTGGCCTAAGTCCTATAACTTTAATGATCTTGTCGAGGCTGAGTGAGGGTCAGGAAGATTCACAGGACATCCCCCGCAGGGTGAAGCTTTTCCCCACCCTGACAGGAATTTGTGAAAGCCTCTTTTGCAGACAGCAAATGGCCAGACAGGGAGCAGCCTCAACCTGCCTCTGTGACTATATCAGTCAATCGCAGGTGGCCTTTGAGTCTGCCTTGTGCCCGCTACCAACTCAAGTGTGTTCTTGCTCTTTCCCTCAG
Seq C2 exon
GAGGAGCAAATCAGCCTGGAGAGCGTAGCCATGGACAGCCCAGTCAACATGAAGTTCAACCTCTCCGGCCTTGGCTCCAAGGAGCACATCCTAGAACTGGTCCCCGCCATTGAGCCCCTCAACAACCACATCCGTTATGTCATCTCGCAAGGGAACGAGGATGGCGTCTTCCGAATCCACCAAAGGAACGGGCTCAGCTACCTGCACACGGCCAAGAAGAAGCTCGCTCCCGGCACATACACACTGGAAATCACCAGCATCCCCCTCTATGGGAAGAAGGAGCTGAGGAAATTGGAGGAGCACAATGAGGACGACTACCTTCTGGGGGTGCTCGGGGAGGCTCTCCGAATGAGGTTGCAGATTCAGTTGTATTAGCCCTCTGCAGACTTGGGCCTTGGGCCCCAGCTCAGATCCCAGCACAGCCGGCCTTCAGAAGTGTTTGGAACATCACTGACTGATTTTGAAGAGGAAAAAAAACAAAAACAAACAAACAAACAAACAAAAAAAAAAAAACAAAGAAGGCCTTCTATTCCTTTCCTTCTTCCTGATTCAGACTTCGGAATGTTGACCCTCGCAGGGAAGGATAATTTAGACTCTGGTATGGCCAAAGATTTGAGTGCAAAGGCAAACATAGTTACTGTATTTTTTATATAACTTCATTTTTAAATATATTAAAAAAAAAAGCAAACCTAAATGTTCAAGAGATCAGCGTATGGCACTAAATGCACAAAACTAATGTGAGCCTTCTTCCTGTTAGCAGTCTATAACACTTTGGGTATTTTGCTATAGTTGCTAATTAAAAAAAATATAGATGTTTATTTATTTTAATGCAGTAATATATGGAGAAATGAACAAACTATGTAAACAAAAAGGGAAACTCGCTTGTTTTTCTTAGATTTATAAATTTGAGCTATTTCTTTTAGAGGTGCTTTAAAAAAAAAATCCAATACATTCAAGAGATGTTTTCCTTTAGTTTTTCCGCCAGCCCTCCAACTGGTGCGCACCTGACTATTTCAAAGAAAGTCTTGCGGAGCTGAATGGGCGGTGTAATCAGTAATTTAAAAAGATGTGGAAGTCGTTTGATCCTGTCCAAAGGAAATGAAAGCCAGAGCAGCTCCTATGACAATATTTCACATCAGCAGATTCGCCAGGCAACAGGAGAGGAAACCACTGTAGCAAAATACCTTGACTGCTTGTGAGACCGTTAGCATTGCAGGCCAAACTGTACTGTATTTCTTCCTCGTAACCTCAAGGACCCACACGTGCCTCCCACAACACCTCATTCTTACCAGGGCGTGCTGTGCACTTGTGGTCCCCTAGGCAGCTGAAGAACCCGCCGTTCCTTTGAGCAGGAACACCTGGCGTTCTGTCGAGTTTGGTGCTGTCGTAGATTAAATGGTGCATTTATTATGTTCAAGCTATTTCAGGATTGCCATGTGTGCAAACAATCATGCCATGCAGCCAAGGAATATATGTCGATGTTTTTTTTTTTAAACCCATGGTTTTTATTTTTATTTTATTTTTTAGAATTTTCATTAATACTGTAGTTATACACCATATGCCTCATTTTATCATAGCTTATTGTGTATGAAATATGTTTGTAAAATGAATTGATGTTTAGTTTGCTTTAGCCATTTGAAAAGATGCCACACCAGGAGGTAACCAATAAGAGCACAGCTCCACATTCTTCTCCCTGGAGAACCCGTTCCTGGAAGAGTGATGGAAACCGGAGATACAAAATGGCCAAAGCACACACCGTCATTCCTCTCGCACCTGTGTTGACCAAAGAGTAGTAACCAGTTATAGCCAATGTTTTGGGGTTTTTTGTTTTGTTTTGTTTCGTTTCGTTTTGTTTGTTTGTTTTTAATAACCAAAAAGAAAAAGAGAAACAGTGTAAATTTGTAATCAAGTGTTTGTGAGGAAAAACGTATGGGTTTTGGTTATGTTTGTTTTTGTAGGTCTATGTATCAAATATGACACTTTTCTTGCAATAAAGCTTATTTTGGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598:ENSMUST00000025497:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(5.1=3.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCATGCTACGAGTGCA
R:
TTTCCAGTGTGTATGTGCCGG
Band lengths:
342-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types