GgaINT0063929 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9120807-9123544:-
Coord C1 exon
chrZ:9123353-9123544
Coord A exon
chrZ:9121096-9123352
Coord C2 exon
chrZ:9120807-9121095
Length
2257 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTTTATTTTTATTCTTACAGGTA
3' ss Score
11.42
Exon sequences
Seq C1 exon
ACTTACAAAGAACACTTAGAAGGTCAGAAACACAAGAAGAAAGAAGCAGCGTTAAAAGCATCCCAGAACACCAATAATAGCAGCACTTCTGCTCGTGGAACTCAGAATCAGTTGCGCTGTGAGCTTTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCATATCCGTGGAGCCAAGCATCAGAAA
Seq A exon
GTAAGAACTTTCTCTTGTTCTTGATGCTTGTATATTTTTCTGCTCATCTTAGAGGAGAGAAAGTGAGCGGAGAAACAATACAAATAATTTGAATAATTTTGTTTAAAAATATTTTGTTCTGCATTTATTTTTAAACATATCTTTAATCTCACTATTAGAAGGGCATTGTTGGGAGAAAAGGGGAAAAATATTGCCACCACATCAGTGAGAAAAGAATGTTTTGGAAAGTTTGAAAATCATAGGATGAAGATGTTGACTAAGGTGGGGAAGAGAGTGAGTGAGGACATGTCCCTCCTTACTCTTTCCAAGACTATTTTCAGTAGTGGTCTTGGTCATTGTTCCTTGGCATTTCGTGCAAAGACAGTATATGGGAGCAAGAGCAGCGCCCTGCAGTAGACTTTATAATGAGTATTTGGAAAAATTTGGTAAGTGTACACTTAGGTAGGAATTCTGGAATACAGAGTACAGGCTGCACTGTGAATCCTTGTGACCCGTGTTTGAATTTGGCCGTACAGTAGTAAATGGAATGTTGGAGTGGGTCCAGAGGAGGCCACAGAGATTTTCAGAGAGCTGGAACACTTCTCGTATGAGGAGAGACTGACTGAGTTGGGCTTGTTCAGCCCAGAGGAGAGACTCGGGCCTTTCAGTATTTAAAGTCAGCTTATAAACGGGAGGAAGACCTACTTTTTACACAGTCTGATAGTAGTAGGACAAGGAAGAATGGTTTAAAACTGAGAGGAGATTTAGATTAAATATTCGCAGGAAACTTTGTATTCAGAGAATGGTGAGGCACTGGGACAGGCTGCCCTGAGAAGCTGTGAATGTCCCATCCCTGGAGATGTTGGGTGGAGGTTGGGTGGGGCCCTGGGCTGCCTGATCTGGTGGGTGATAACCCTGCTGCAGCAGGGGGCTTGGAGCTTTAAGGTCCATTCCAACCTAAGCTATTTTATGCTCCTATGTTTCTAGAGTTTAAAAGTTTTCTAAATACATTTTTTTTTGTTGTTAGTCCAGTTGTTAGTACAATTTAAATTGACTTGTCTAGTATTCTTTCTTTTATAAATACATTGAGATGTTAAATTTTTGGGTTATGCTCAATAATCACATAAGTACATGAGGTGTGATACTTACTGTCCCCATGCACTTGGATGTAGCTTTCTCTTCCCTGTAGGTAGTCACTAGCCACTGCTTATTTAGGTTTCCATCTGTGTAAAACTGAAATCTCAATCTATTACTTCGGTACACTCTGAAGAATCTTGTCCATTCTGCTGCAAAAAGTCATTTGAAGAGTTGCTTAAACTTCCACTATTACCAGACAATATGTCTATGGGCAATATGATTTATTTAAAAAATAAGAACAAAGAGAAAAAGAAGTGTGTGTCCTATTGTATACATATTATCATTGTCTACAGGTGTAGATAAAAGCAGACTTTTCTTGCTGGTTTCAAATCTTTCTTGATCTTTAGCTTTCATCATGTGTATTTGGTTTTTATGAACCCTCTATATTCCTTTCTCAGGTGGTGATTGGCTGTCTGTAAAAGGAACTACTATTCTGTCCTTAAGCATTACTTCTAAGAGTAAACACTGTGCCTCTTCGTTTTCTTGAACTTTAAGGAGCACTGAAATACTCCTCACACATCCTCCTTAATTATCTCTGCAGATCTGTATTTAAAATATATATATATATAGAAAGAAAAAAGAAACAACCTTTCCCTAATGAATCTCTTCAAATTTGCTAGATAATTTGGCAGTTCTTTCAGTATTCTTAAAAGATAGTGATTAAAAGAGACAGTGTTCCTGAATTTGAATTAAATAACTTTTATTTATAAGTAATATTTGGAACCAGAATAGCTTAATGTACTATGGTTTTTGAAGGGAAGAAAAAACAATCAGGCAGCAGAGCAGTGACATAGGAACAATTTGAGCAAAATGCTTCCTTCTGTTTTATTGTCTTACCAGTTTATTGGCTTTCTGTTCTCACACACATAGCTTTTGGAGTAAGTATGTGAATTTGTGATGAAAATAAGCAATCTGGGATGATGATTAAGTATTTCCTTGTTTCAGATGACAAAAGCTTTTACATCTCCATCCTTTTTGTACCAAGATCAGTTTTTGTTAAGAAGCAGTAATTAACTTTTTAGTTACTGATTTTTTTTCTTTGATATTATGTTTGTGTTTGTATTAGAGCTTCCATAAGCTATAAGTTCATTTTTTCTAGTTTTCCCAGGGAGGTGATATGATTTTATTTTTATTCTTACAG
Seq C2 exon
GTAGTAAAATTGCACACAAAACTTGGCAAACCCATTCCTTCAACTGAACCAAATGTGGTTACCCAGGCTTCTTCCTCAACATCCACATCTGCTTCCAAACCAGCTGCCTCTGCTTCAAGCATAGCAACTAGCAGCAGTACTGTGAACTCCTCTGTTGCGTCCTCTGCGGTGAAAATTCTTACTCCCACGGCAAACACACCACTTAACACAGCGTCCAACAACAAAACATCTTCAACTGCTGCTAATATAGCAGTAAAGAAAATATCTACACCGAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.804
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]