BtaINT0164433 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41310440-41311436:+
Coord C1 exon
chr20:41310440-41310631
Coord A exon
chr20:41310632-41311144
Coord C2 exon
chr20:41311145-41311436
Length
513 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
AATATGCTTTTATTTTGTAGGTG
3' ss Score
9.28
Exon sequences
Seq C1 exon
ACTTATAAAGAACATTTAGAAGGGCAGAAACATAAAAAAAAAGAAGCCGCATTGAAAGCCTCACAGAATACCAGCAGCAGCAACAACTCTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq A exon
GTAGGTGTTTTTTTTCCCACACATCCTTATGTCTTAACTCTCTTTTCTTTTCCATTTTGGTGGGGGTTGGGGGTAAAGTAAAGGAGGTTTCAAAATTTGAAAATTTTTGAGGGTATTACATGCCTAATGTATGTATAAAGGTGATGTCAAATAGTCATTGCTTAAGGAAGGAAAGACTGGTGACCCGTCTTAAAATTGAACTCGGTCGTTTTTCTCCCACCAACTGAAATTGAATCATGTAGTTGTTTTCTGCCTTCTGTTATGCTTAAGTATAGGTTGGTATGCATGTCATTTCCTCACCAAGTGATAGATGTAATATGTATCCGAATCTGTTTCACACAGATAGTTTTGAAAGTAATGAGTTTTTGTTTAAAAATGTATGAGAAAAAAATACAACAAAGAAAAATATGGTTAAGATTTTCATTTTATAGGGTCTTTTAGGCAAACTTTTTTAAAAAAAAATCTACATTTTTCTTGAGTTTTCTGACAGATAAATATGCTTTTATTTTGTAG
Seq C2 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCCATTCCTTCAACAGAACCAAACGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCAACTGCCTCTCCTTCAAGCATTGCAGCAAGCAATTGTACTGTGAATACTTCATCAATTGCAACTTCTTCAGTGAAAGGTCTTACAACTACAGGAAACTCGTCTCTTAATAGCACAGCCAACACTAAAGTATCAGCAGTGCCTGCAAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414:ENSBTAT00000011072:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACGTTGTGAGCTCTGTG
R:
CTTGGCAGCCATATTTGCAGG
Band lengths:
344-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]