RnoINT0168808 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62182217-62183141:+
Coord C1 exon
chr2:62182217-62182408
Coord A exon
chr2:62182409-62182849
Coord C2 exon
chr2:62182850-62183141
Length
441 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
GTGTGCTTTTTGTTTTGTAGGTG
3' ss Score
11.73
Exon sequences
Seq C1 exon
ACTTATAAAGAGCACTTAGAAGGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACTCAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq A exon
GTAGGTGTTTTGGTCCCCCCTCCCACCCACACACAGCCTTATGTCTACTCTGCTTACTTTCACTTTTCAACAGGGGTTTGAAAAAGTTGACTTCCATTTTTGAAAATTTTGAGTGTATTATAAACCTTGCTTAAATGTTAACATACATCAAGGTAACATCAATTAGTCATTGCTTAAAACAGAAACACTAGAGAACTTTAAATTAAACCACTTGGCTTTTCAATTTGGGATTATTTCATTTGTTTTGATTAACTACAGACTGATTTGCTTGTAGACAAGTCCCTTCATCAATAAACACAGATGTTAAAATGAGTTTTGTCTGTAACAAAAAAAAAATAGCAAAGAAAATTAAGTTTTGACTTTTGTTTTATAGTCTTACTCAGACAAACTTTAAAAAAAACACATTTGAGTTTCCTGACAGGTGTGCTTTTTGTTTTGTAG
Seq C2 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAACCAACTGCCTCTCCTTCAAGTATTGGAGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTACTTCAGTGAAAGGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGGTACCTACCAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.773
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGCTACGTTGCGAGCTC
R:
GGCAGCCATATTGGTAGGTACC
Band lengths:
345-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]