HsaINT0185605 @ hg19
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32403211-32404202:-
Coord C1 exon
chr5:32404011-32404202
Coord A exon
chr5:32403503-32404010
Coord C2 exon
chr5:32403211-32403502
Length
508 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
AGTGTGCTTTTGTTTTATAGGTG
3' ss Score
10.25
Exon sequences
Seq C1 exon
ACTTATAAAGAACATTTAGAAGGACAGAAACATAAAAAAAAAGAAGCTGCATTGAAAGCCTCACAAAATACCAGCAGCAGCAACAGTTCTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGCGATGTGTCTTGTACAGGAGCAGATGCGTATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
Seq A exon
GTAGGTGTTTTTTTCCCACACACCCTTATGCCTTGATTCTGTTATCTTTTACTTTTTCAAAGGGGGTTAGGTAAAGGTAACTTCAAAGTTCGAAAACTTTTAAGTGCATTATAAGCCTTGCTTATGTGCTAATAATACATAAAGGTGACATCAAATAATCATTGCTAAAAGAGGGAAAGACTGGAGACCTGTCTTTAAATTGAACTAAACCATTTATTTCACTAACTGGGAATTGTCATGTGATCATTTTTAATGTAGCCAAGTCTGTTCATCTTTCTCTACCTCAGTTTCCTCACCTAATAGTAGATGGAATATGTATGCATATTTGCTTCACAGAGATTATCTTGAAAGTAATGAGTTTTGTATATGTGTGTATATACAAAAACATATAGCAGAAAAAATACAACAAAGAAAAGCATGGTTTAGATTTTCATTTTATAATGTTCCAGGCAGACTTTTCAAAATCTATTTGAGTTTCCTGACAAATAAGTGTGCTTTTGTTTTATAG
Seq C2 exon
GTGGTTAAGTTACACACAAAACTTGGTAAACCCATTCCATCAACAGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCGACTGCCTCTCCTTCAAGCATTGCAGCAAACAATTGTACTGTGAATACGTCATCAGTTGCAACGTCTTCAATGAAGGGTCTTACGACTACAGGAAACTCGTCTCTTAATAGCACATCTAACACTAAAGTATCAGCAGTGCCTACAAATATGGCTGCCAAGAAAACATCTACCCCCAAAATAAATTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-ZFR:NM_016107:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.949
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGCTCTGCGATGTGTC
R:
GGGGGTAGATGTTTTCTTGGCA
Band lengths:
352-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)