GgaINT0064427 @ galGal3
Intron Retention
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53641718-53647318:-
Coord C1 exon
chrZ:53647127-53647318
Coord A exon
chrZ:53641754-53647126
Coord C2 exon
chrZ:53641718-53641753
Length
5373 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTATCCCTGAATTGCTTTTGAAT
3' ss Score
-2.71
Exon sequences
Seq C1 exon
GTCATAGTGTCTGGTTACCGAATACAACTACGAGATCTCTGCAATAGCTCAGCGCTGTCTGAATTTCTTACAATCCAAAATCGCTCAGTGGCCATGGACTCTGAAGCCTTCCTTTGCACCTTACCAAAGGAAACACTCCATGCAGCCGAGCTAGCCTTCCGTGCTAACCTGAATCCTTTAAAGCCGCTTCAG
Seq A exon
GTGAGTCCGCTGCTCACACTTCTGAGGAGGAGTCATTGATGCTGTGACATTTTCAAGGGGTTTCAATCTGGGAATTTATCACCATATTTTCAAAGTGAATTCTTTATTGGTACTGAAAAAGAAGAACTGTAGTCTCTATTACTGAGGCGTGAACAGTGTTTTTTCTTCCTGTCCCTTCTTTTGCAGTGTGATTTACATAGTGTAAATACATGTAGACTAATTTGTCAGGAGGAAAATATTTATGTTGTGAAGTAACATACAGATTCTTGGTCGTCGCTGTGTTTTGGTCAAATGTAGTATCTCAGCTGATGTGACCCCAGATGTTAGACCAGCTCCTGCTGAGTACTGAAAATTCACCGCTGCAATTACCAGTGGGCCATTGCGTGCAGAAGTTTTAGCCAGTAGCAGGCCACAACCTCTGAGCAGATTTTATTCATACAAAGTGTCAACTTTTAAATAGTCTGCTTGAAAAGTTGAACAACTGAATGGATTTTGGAGCAAGTGCTTCAAAACTCATTGAATTTCAAGAAAATGCATAGTTTATGGGGTATTTGGAGTTTGGAGCAGACTTAGCTCTTTATACGAAAAACAGAAGCGATGCTTTACATTAGGTCCACAATATCTGGATAAAAGCAATAGTTTTTAGAAGTTAGTGGTGGAAGTATCAGAGGGAAGGGACCACAGAACCCAGTCTGAAACAAACACTCTTGTCTGTACTGGAAGAAAATAAACTTCAGCTATGGGATTTTCCAGGTTTGATGAGCAGAACAGACAGTCATGTACCACTTGTTTGGCTTTGTCCCCAGTCAAAGAGAGATCGTTAACAAGTACCGGAATCACATTACTGATCAGTGCAGTACACAGTGGTCAGTTACTTCTCTCTGCAGCTTGTTTTCTGTTTTCCATATGTCCTTCATCTGCATTTGTTCTTTTCTTCTGTAAGATCAAAATCATCAAGAGATGGGGTAACCTACTGAAATTGTTCCTGTAACAAAAATGAGCTATTTTGAAAATTCATGGCTATAAGCAGTTTCTTGTGTACATTTATATGTGTGTATGTACTTTAAATCACTCAGAGATATGCTAGATTTTTAGGAACTGAGTGGAATGAAAGTTGCCAGTTAGTACCACTGAGCACTGATCTTCTAGACCCTCTGGAGACTGAGCATCACTTTTCTCATTTTTGAAAGTCTTTACAGTTCAGCCAACAGGAGCAGATACACAACATATCTATGTCTCTGCTGTTACATCTGTATTGTTTACTGCTGAAAGAAAACAGTTATAAGCCACTGTGATTGTGTCTCTTGGCAACAGCCGTGTAGATAAAGACTATACGTGCAAGTTTGGGTGACTTCTGAGAAGCTGGTTCTGAGAAGCTTTACAAAAGCCCAAGCCATGAAGCCAGCAGTAAACCTGTTGTGAATTGTACACCATCTTGTAAAGGTCCATAGTTTTCTTCAGAGAAGTCTAACAGGCTAATAAAAACTACTGTAATGCCTTAGTGAGTGAAATAAGACCAGCAAGCTTCAGTATGGCTGGACAAAATGAATAAAACACTAGGATCGTGTCGACACATTTGAAACTTAGTGGCTTTAAAGGCTAAAAAACTGCCTTGACCTGTAGTAACATCTTGGAACAAAGAACAGATTTTCTCTTCTTAAACAAAGAATGCTTTTGGTTAATAGATTATCATTAAAGGCACTGGGGGTCAAATCTTGGAAAAGCATACTGAAGCTAGCTTGCACCCTATCCACTGCAGTGCCTTCAAACCAAAAGTAGCAAGTTGATTGTCCCAGAGATTTGTTTTTAATTTTTTGCTTAATCTCTATGATGTTAGTAAGTAAAAGTAAAGGCCAAGTCAGATGCAAGTACAACAGAAATTTAGAGGCTGTTTTTTGGCTCATGTGATGAGACCTGATCTCTACTGGTTTTTGAAGAGTCTGAGAAAATGCATCTTAAAATAACAGGTTGATACTGTTGGGGTGAAGGGGACTTTCAACAACATACAAGAATTTTGTAAATGCAGCACTGAGGTCTTCAACAGTAACACGGAATTTTTTGCCAATCGAATATCTGGAAAGTAGACTGGCTGTAATTTCTTGTGCACTGCATGCAGAAAACTCAAGCCAGCATCCACTTGTTTGTTCCTGCCCCTCTACATTCCTCTTTGCTGTTCTCTCTGCAAGACCATGCAGCAAATTGCATTAGGGAATTGATCTGGATTGTAAGTGACTAACATGATTGTATGTGCTGAAGGATGAAGAAGGGGTTGGTACAAGACTGGGAACCCAGTAGTTGGTGTATGCATGTGTGGGTTGAGACCCCTATGTCATCATCTGCTTCTACCATCCTTAAGTGTTTGTGCACTTGCAGCCTGAGCAAGAAATAAGTGTTCAGGTAACTCACAACAAGACAGTAATTATTTGCAAATTTTGAACAGAGCACAGTTTTAAAAAGAAAATTACTACAGCTGCATGGCAAATTGTATGAGCTCTGAATGTCACATCAGTGCAAAGGAAGTTTTTTAAAAAAGGCAAAATCTCAACACTTGTCGTTGCATACCTTGCTCATCTCTTCTATCCAGAACAGCCTGAACTTTGCATAAATTGGACTAGTACAATAGAGTACTTTCAATTAAAATTGTACATGAAGGTTTCTAGCTCTGCAGTTCATCCCCTATGTGACTTTCATTTAGCCAGCTCTCTTGGGTGAGAATACAGAGCCAAGATGGTATAGGCTTGGAGGTTCAGGTGTACCTCCTTGTTCTCTGTTACATAAGTACCTATTTGGGCTCGGCTGTTTTGGTGGAAACATGGAATTAAATCAGGAAGTGATCACAGATCCTCATGGCAGAGGATCCACTTTCCTGCTGGATAGAGTATTCGCTCCACCAGAAGCAACACGTGTTTATGAAAGCCAAATTTAGTTTTCCAGGATCCATGTGTCAGTTTTCATCTGTGAAGCCCTTGTGCCCAATATAAGAACTGAAGGCCTTAGGACATGGTATGAAGGATGATTGCAAGCTTGTCTTCTTCAGGTTTGTCTTCCACTGGATGTACTCAGTGAAAATGAAGTGAGGCAGGATAAGCTATTTGGGGAAAAAACAGAGAAATAAAACATCTAATACCATGTATGCAGTTTGCCTTTTCAACTTTCTCTCTGTGCTAGACCAACAAGTTATCCTGTGGAAGAACTCTGCAATCTGGGGAATGTTACAGGCACCCCTGCTTATCAAGAGCAGTGTCAATAAGTCAGAGGTATTCCAACAGACTGGTGTTGTGCTGGGAGAGGGTTCTTGGAGCATAAAATTACTTCTCTGTGCAACAGCTTTTACCTTCTCAAACCTCGCCAGTTTTGTAAACAACTTGAGGGGAGGAAGTTAAGTGACAGAGACAATTGAAATTGCTCCTGTGGGATTTCATCTCTGCAGTGCTTCTCAAGAAGGGCTTCACTGCATTCACTTCTAGTGGTGTGGGTTTGTAATATGCCACAAATATGTTGTGGCTTGTGTACCATAGTGGTCCTTCAAGGAGTGTGGGTGAGCACGTGAAAATCCAGTTGTTCTTTTCCCTTCATAACACAGTTGGTATTTTGTCATATGGTTAGCATGAACTAAGCATTGAATAATAAATGTGTTTCAGTTGAGAAAATGGCTTCAGAAAGTGTAAATACACACTGCAATTGAGCTTGTGGCTTTCCATGCTCTTTTGAGTGTTTTCAGTCAAGCACAGTGACATCATGCTTTCAAGCAGCTGTACTTTCGGACTTCCACTCCCAGGAAACAAAAGCAGAAACATAAAGCATGTGATTTTTCTGCAAAGTTCAGTGTTAAGTTTCCACTAAGATCAGCGTAAAATTGTGGTAACTATTTCAAAGCAAACACAGCAGCGTGGTGTTGCTGAGCAGAGGCATTTAGGTGTTATTATGCAACAAATAACTGGATTACGTTATGACCTTTGGACACTTTGAATACAGATCTATTCTCCTGTATGTTAAACAGTTGTGTTTCCCTTAGAGCAGGAGAGGACAGGTGGGTATATTCAATGCTTCTCTTGACTTTGTAGTCAACTGTAGTTACCAGAAGTATTTCCCTAATTTGAGTCCTGTACGTGCACACATGCAAGCACAGAGTGAAGTCAATGCAGTGTGTAACTCCAGAGTACGAAGAGATTTGTGTGCCCTAAAGGACAGGTCTAGATGAAGGCAAGACTTACCAGCCGCTAGCACAGTAATTGTGAAGGGCAGCTCTGTTCAAAACCTGTAAGAGTTTTCTTTCTGCCGTGTGCCTAGAGAAGACAGGTGATGTTTTCCAGCATTTCATTGGAAAACAAGACATTACCCCCACACTGCTCTAGTGCAGGCACCTAGTAAATACACTGTCACAGTGGGAACAATCTTACTTTAGAAGTACTGAATTTAGAGGGCACTTTTGAATGTGATGAACTATTGAGAGCCACTACAAAAAGGTATTTTCAAGGAAACTGATGACATTTCAGGGTCAGGTTAAAAAACTCCTTGAGTGTCATAACTCATATGAATCTTGCATACTGGATCAGACTAAAGCTCTGTTCAGCTCTGTTTCCCCTGAATGCTACTCCGGCAGTGCTACTTCCTCAACTACTACTAGAATCTTAGTGTTCAGTAGATTTTGGTAAGCTTTCTTCTTTCATGAAGTTTTCTTAGCCTTTTTCAAAACCACGTTAACTTTTTCTTCAGCATTGCATAACATCTACATAATTTCTTCATTTTGGCTGGGTTGTCTATCAAGTAGTTCCATTGGTCTTTTTTAAACTGATCTTCAGAGTGGAAGTCCTCTATTCTTGTATGACGAGGCACAGTGAATAATCATCCCCTATTCACATTCTCCATCCCACTTGTAATTCTGCAGACCTCTGTCATATCCTGTATTTGTCATTACAGTCTCTATTGGAAGAACTGTGGGCTGTTGTTCTTCCTTCAGTAGCCATTCATATCTTAATTGTGCTTGTACTCCTTTTCTGTACTTGTATTCTTTTAGAGGTGGGGGATCCAAAATGACACTGAGTTCCTCAGAAATAGGGATGAACTGTGGATTTATATTGATGATGACCTGTCTTATCATTCTATGCTTAAGATCTCATTCCAATTTTAAGATCTCCTTTTTGAGTGACAGTGGATAGTTTAGAGCCATCCAGGGATATTTCAAGGTAGAACTGTCCCTTCCATATGTACTTTACTTCACAGCACTGAATTTTATCTGGCATTTTATAACAGTACATCAACACGAGTCCTTTCACTAGTCCTTTGCAATTCACTTTTGACTTTCACTATTCTGAACCAATTAGTATCATGAGAAAACTATTCCTCATCCACCCTATCCCTGAATTGCTTTTG
Seq C2 exon
AATACATTAAACAGCACAAATTCCTTGCAGGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000037759:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]