GgaINT0064470 @ galGal3
Intron Retention
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53601954-53602962:-
Coord C1 exon
chrZ:53602719-53602962
Coord A exon
chrZ:53602517-53602718
Coord C2 exon
chrZ:53601954-53602516
Length
202 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ACATGGCCTTTTTCTTGCAGGTA
3' ss Score
10.79
Exon sequences
Seq C1 exon
ATTTGGAGATGGTTATACCATAGTGGTGCGAATTGCAGGGGGTAACCCAGACCTGAAGCCAGTTGAGGAATTCTTTGGGCATGCCTTCCCTGGAAGTGTCCTGAAGGAGAAGCATCGTAATATGTTGCAGTACCAACTTCCGTCTTCGCAGTCTTCGCTGGCCAGAATATTCAGTGTTCTCTCCCAGAACAAAAAGAGACTCCACATAGAAGACTACTCCGTTTCTCAGACCACACTTGACCAA
Seq A exon
GTAAGTTTTTAGTAGCCTGTGTGCCAACTGTGGTCCTGGAGAGGTAGGAATAAATGAGCCAACTTACCTGACCTATCTTGTAAGGGCATTTCAGCAAGCTAGGTACTGTATTCCGGGACTGGTCCAGAAAGGACTCAGTGTATAGAATGCTCTAAATTAGCGAAAATCCAGGGCAGTGTATGACATGGCCTTTTTCTTGCAG
Seq C2 exon
GTATTTGTGAATTTTGCTAAGGACCAAAGTGACGACGACCACACTAAGGACCTGTCATTGCACAAAAACCAGACTGTGGTAGACATTGCAATCCTTAATTCCTTTCTGCAAGATGAGAAGGTAAAAGAAAGTTGCGTGTGAGCCAATTTCAGCCAAGAAATAATGAGCAGAATGCAAACTTCTTTTGCCTGGGGATAGGTTACTCCCAAAGAAGCTAGAGGGAGAGAAACTGGACACTCTACTGATAACCATTCAATGCAATGCAATTCAATGCAATGAAAACAAAATTCCATTTTAGGGGCAGTGCCTCGTGGAGTCGTCTTGTACTGTTCTCAAGTGAAAGACTTGAATTTAGCTCATTACAGTACAACTCTGTGAAGCTGTGGTAAAGCACCCACCAGATGCTGTTGGTTTTCAACCATACTGCATCTTGTCCTGTACAGTATGTTTTTACTGGGGTTGCAAAAACAGTTCGTTGAGGAATCATGGCCAGTGGTTATTTATTGATATATTAAGGACACGTATGTTTTACTCTAGAAAACATGCGTGTCAGCAGTGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000037759:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF137321=DUF4162=FE(84.4=100)
A:
NA
C2:
PF137321=DUF4162=PD(5.2=10.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAGTGTCCTGAAGGA
R:
TGGCTCACACGCAACTTTCTT
Band lengths:
302-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]